Department of Biostatistics, Epidemiology and Informatics, University of Pennsylvania, Philadelphia, PA 19104, USA.
Institute for Biomedical Informatics, University of Pennsylvania, Philadelphia, PA 19104, USA.
Toxins (Basel). 2023 Jul 9;15(7):451. doi: 10.3390/toxins15070451.
Venoms are a diverse and complex group of natural toxins that have been adapted to treat many types of human disease, but rigorous computational approaches for discovering new therapeutic activities are scarce. We have designed and validated a new platform-named VenomSeq-to systematically identify putative associations between venoms and drugs/diseases via high-throughput transcriptomics and perturbational differential gene expression analysis. In this study, we describe the architecture of VenomSeq and its evaluation using the crude venoms from 25 diverse animal species and 9 purified teretoxin peptides. By integrating comparisons to public repositories of differential expression, associations between regulatory networks and disease, and existing knowledge of venom activity, we provide a number of new therapeutic hypotheses linking venoms to human diseases supported by multiple layers of preliminary evidence.
毒液是一种多样化且复杂的天然毒素,已被用于治疗多种人类疾病,但用于发现新治疗活性的严格计算方法却很少。我们设计并验证了一个名为 VenomSeq 的新平台,通过高通量转录组学和扰动差异基因表达分析,系统地鉴定毒液与药物/疾病之间的潜在关联。在这项研究中,我们描述了 VenomSeq 的架构,并使用 25 种不同动物物种的粗毒液和 9 种纯化的 teretoxin 肽对其进行了评估。通过与差异表达的公共数据库进行整合比较、与调控网络和疾病的关联,以及毒液活性的现有知识进行整合,我们提供了一些新的治疗假说,这些假说将毒液与人类疾病联系起来,并得到了多层次的初步证据支持。