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可编程内切酶在序列和连接独立无缝 DNA 组装中的应用。

Applications of Programmable Endonucleases in Sequence- and Ligation-Independent Seamless DNA Assembly.

机构信息

State Key Laboratory of Biocatalysis and Enzyme Engineering, Hubei Collaborative Innovation Center for Green Transformation of Bio-Resources, School of Life Sciences, Hubei University, Wuhan 430062, China.

出版信息

Biomolecules. 2023 Jun 21;13(7):1022. doi: 10.3390/biom13071022.

DOI:10.3390/biom13071022
PMID:37509059
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10377497/
Abstract

Programmable endonucleases, such as Cas (Clustered Regularly-Interspaced Short Repeats-associated proteins) and prokaryotic Argonaute (pAgo), depend on base pairing of the target DNA with the guide RNA or DNA to cleave DNA strands. Therefore, they are capable of recognizing and cleaving DNA sequences at virtually any arbitrary site. The present review focuses on the commonly used in vivo and in vitro recombination-based gene cloning methods and the application of programmable endonucleases in these sequence- and ligation-independent DNA assembly methods. The advantages and shortcomings of the programmable endonucleases utilized as tools for gene cloning are also discussed in this review.

摘要

可编程核酸内切酶,如 Cas(成簇规律间隔短回文重复相关蛋白)和原核 Argonaute(pAgo),依赖于靶 DNA 与向导 RNA 或 DNA 的碱基配对来切割 DNA 链。因此,它们能够识别和切割几乎任意位置的 DNA 序列。本综述重点介绍了常用的体内和体外基于重组的基因克隆方法,以及可编程核酸内切酶在这些无需序列和连接的 DNA 组装方法中的应用。本文还讨论了将可编程核酸内切酶用作基因克隆工具的优缺点。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/89a3/10377497/bb2c902c2a6b/biomolecules-13-01022-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/89a3/10377497/957c560dab00/biomolecules-13-01022-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/89a3/10377497/5235dbb6957b/biomolecules-13-01022-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/89a3/10377497/ac15248a1167/biomolecules-13-01022-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/89a3/10377497/bb2c902c2a6b/biomolecules-13-01022-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/89a3/10377497/957c560dab00/biomolecules-13-01022-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/89a3/10377497/5235dbb6957b/biomolecules-13-01022-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/89a3/10377497/ac15248a1167/biomolecules-13-01022-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/89a3/10377497/bb2c902c2a6b/biomolecules-13-01022-g004.jpg

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[Prokaryotic Argonaute Proteins as a Tool for Biotechnology].[原核生物的 Argonaute 蛋白作为生物技术工具]
Mol Biol (Mosk). 2022 Nov-Dec;56(6):915-936. doi: 10.31857/S0026898422060131.
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Precise DNA cleavage using CRISPR-SpRYgests.利用 CRISPR-SpRYgests 进行精确的 DNA 切割。
Nat Biotechnol. 2023 Mar;41(3):409-416. doi: 10.1038/s41587-022-01492-y. Epub 2022 Oct 6.
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Site-Directed Mutagenesis Method Mediated by Cas9.基于 Cas9 的定点突变方法。
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PlasmidMaker is a versatile, automated, and high throughput end-to-end platform for plasmid construction.PlasmidMaker 是一个通用的、自动化的、高通量的端到端质粒构建平台。
Nat Commun. 2022 May 16;13(1):2697. doi: 10.1038/s41467-022-30355-y.
6
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