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家族性特发性震颤伴发的新型变异:临床特征和计算机分析。

A Novel Variant in a Family with Essential Tremor Plus: Clinical Characteristics and In Silico Analysis.

机构信息

Medical Genetics, Department of Clinical and Experimental Medicine, University of Foggia, 70122 Foggia, Italy.

Neuropsychiatry for Child and Adolescent Unit, Department of Woman and Child, Policlinico Riuniti, 70122 Foggia, Italy.

出版信息

Genes (Basel). 2023 Jun 29;14(7):1380. doi: 10.3390/genes14071380.

Abstract

BACKGROUND

Essential tremor (ET) is one of the more common movement disorders. Current diagnosis is solely based on clinical findings. ET appears to be inherited in an autosomal dominant pattern. Several loci on specific chromosomes have been studied by linkage analysis, but the causes of essential tremor are still unknown in many patients. Genetic studies described the association of several genes with familial ET. However, they were found only in distinct families, suggesting that some can be private pathogenic variants.

AIM OF THE STUDY

to characterize the phenotype of an Italian family with ET and identify the genetic variant associated.

METHODS

Clinical and genetic examinations were performed. Genetic testing was done with whole-exome sequencing (WES) using the Illumina platform. Bidirectional capillary Sanger sequencing was used to investigate the presence of variant in all affected members of the family. In silico prediction of pathogenicity was used to study the effect of gene variants on protein structure.

RESULTS

The proband was a 15-year-old boy. The patient was the first of two children of a non-consanguineous couple. Family history was remarkable for tremor in the mother line. His mother suffered from bilateral upper extremity kinetic tremors (since she was 20 years old), anxiety, and depression. Other relatives referred bilateral upper extremity tremors. In the index case, WES analysis performed supposing a dominant mode of inheritance, identified a novel heterozygous missense variant in potassium calcium-activated channel subfamily N member 2 () (NM_021614.3: c.1145G>A, p.Gly382Asp). In the pedigree investigation, all carriers of the gene variant had ET and showed variable expressivity, the elder symptomatic relative showing cognitive impairment and hallucinations in the last decade, in addition to tremor since a young age. The amino acid residue #382 is located in a transmembrane region and in silico analysis suggested a causative role for the variant. Modelling of the mutant protein structure showed that the variant causes a clash in the protein structure. Therefore, the variant could cause a conformational change that alters the ability of the protein in the modulation of ion channels Conclusions: The gene variant identified could be associated with ET. The variant could modify a voltage-independent potassium channel activated by intracellular calcium.

摘要

背景

特发性震颤(ET)是较为常见的运动障碍之一。目前的诊断仅基于临床发现。ET 似乎呈常染色体显性遗传模式。已经通过连锁分析研究了特定染色体上的几个位点,但许多患者的特发性震颤病因仍不清楚。遗传研究描述了几个基因与家族性 ET 的关联。然而,它们仅在特定的家族中发现,表明有些可能是个体的致病变体。

目的

描述一个意大利 ET 家族的表型并确定相关的遗传变体。

方法

进行临床和遗传检查。使用 Illumina 平台进行全外显子组测序 (WES) 进行基因检测。对家族中所有受影响的成员进行双向毛细管 Sanger 测序,以调查变体的存在。使用计算机预测来研究基因变体对蛋白质结构的影响。

结果

先证者是一名 15 岁男孩。患者是非近亲结婚的两个孩子中的老大。家族史中,母亲这一脉有震颤病史。他的母亲自 20 岁起就患有双侧上肢运动性震颤(伴发焦虑和抑郁)。其他亲属也有双侧上肢震颤的描述。在该指数病例中,假设显性遗传模式进行 WES 分析,鉴定出一种新型杂合错义变体在钾钙激活通道亚家族 N 成员 2()(NM_021614.3:c.1145G>A,p.Gly382Asp)中。在系谱调查中,所有携带该基因变体的人都患有 ET,表现出不同的外显率,年龄较大的有症状亲属在过去十年中除了年轻时就有的震颤外,还出现了认知障碍和幻觉。第 382 号氨基酸残基位于跨膜区,计算机分析表明该变体具有因果作用。突变蛋白结构建模表明,该变体导致蛋白结构冲突。因此,该变体可能导致构象变化,从而改变蛋白调节离子通道的能力。

结论

鉴定出的 基因变体可能与 ET 相关。该变体可能会改变由细胞内钙激活的非电压依赖性钾通道。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1e96/10379157/1479785a644b/genes-14-01380-g001.jpg

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