Department of Molecular Microbiology and Immunology, CSIR-Central Drug Research Institute (CSIR-CDRI), Sector 10, Jankipuram Extension, Lucknow 226031, India; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad 201002, India.
Science Department, University of Roma Tre, Via della Vasca Navale 84, Rome, Italy.
Biochim Biophys Acta Proteins Proteom. 2023 Nov 1;1871(6):140942. doi: 10.1016/j.bbapap.2023.140942. Epub 2023 Jul 27.
HSP70 and its evolutionarily diverged co-chaperone HSP110, forms an important node in protein folding cascade. How these proteins maintain the aggregation-prone proteome of malaria parasite in functional state remains underexplored, in contrast to its human orthologs. In this study, we have probed into conformational dynamics of plasmodial HSP70 and HSP110 through multiple μs MD-simulations (ATP-state) and compared with their respective human counterparts. Simulations covered sampling of 3.4 and 2.8 μs for HSP70 and HSP110, respectively, for parasite and human orthologs. We provide a comprehensive description of the dynamic behaviors that characterize the systems and also introduce a parameter for quantifying protein rigidity. For HSP70, the interspecies comparison reveals enhanced flexibility in IA and IB subdomain within the conserved NBD, lesser solvent accessibility of the interdomain linker and distinct dynamics of the SBDβ of Pf HSP70 in comparison to Hs HSP70. In the case of HSP110, notable contrast in the dynamics of NBD, SBDβ and SBDα was observed between parasite and human ortholog. Although HSP70 and HSP110 are members of the same superfamily, we identified specific differences in the subdomain contacts in NBD, linker properties and interdomain movements in their human and parasite orthologs. Our study suggests that differences in conformational dynamics may translate into species-specific differences in the chaperoning activities of HSP70-HSP110 in the parasite and human, respectively. Dynamical features of Pf HSP70-HSP110 may contribute to the maintenance of proteostasis in the parasite during its intracellular survival in the host.
热休克蛋白 70(HSP70)及其进化上分化的伴侣蛋白 HSP110,形成了蛋白质折叠级联的一个重要节点。与人类同源物相比,这些蛋白质如何维持疟原虫中易于聚集的蛋白质组处于功能状态,这方面的研究还很不充分。在这项研究中,我们通过多次微秒分子动力学模拟(ATP 态)探测了疟原虫 HSP70 和 HSP110 的构象动力学,并将其与各自的人类同源物进行了比较。模拟涵盖了 HSP70 和 HSP110 分别为寄生虫和人类同源物采样 3.4 和 2.8 微秒。我们提供了对特征系统的动态行为的全面描述,并引入了一个参数来量化蛋白质的刚性。对于 HSP70,种间比较显示在保守的 NBD 中 IA 和 IB 亚结构域的灵活性增强,NBD 之间的连接区的溶剂可及性降低,以及 Pf HSP70 的 SBDβ的动态与 Hs HSP70 明显不同。对于 HSP110,在 NBD、SBDβ 和 SBDα 的动力学方面观察到寄生虫和人类同源物之间存在显著差异。尽管 HSP70 和 HSP110 是同一超家族的成员,但我们在它们的人类和寄生虫同源物的 NBD 亚结构域接触、连接区性质和结构域间运动方面发现了特定的差异。我们的研究表明,构象动力学的差异可能转化为 HSP70-HSP110 在寄生虫和人类中的伴侣活性的种间特异性差异。Pf HSP70-HSP110 的动态特征可能有助于寄生虫在宿主细胞内的存活过程中维持蛋白质稳态。