Department of Thoracic Surgery and Oncology, the First Affiliated Hospital of Guangzhou Medical University, State Key Laboratory of Respiratory Disease & National Clinical Research Center for Respiratory Disease, Guangzhou, 510120, China.
School of Clinical Medicine, Henan University, Kaifeng, 475000, China.
Adv Biol (Weinh). 2023 Dec;7(12):e2300190. doi: 10.1002/adbi.202300190. Epub 2023 Jul 30.
Cellular senescence contributes to cancer pathogenesis and immune regulation. Using the LASSO Cox regression, we developed a 12-gene prognostic signature for lung adenocarcinoma (LUAD) from The Cancer Genome Atlas (TCGA) and a Gene Expression Omnibus (GEO) dataset. We assessed gene expression, drug sensitivity, immune infiltration, and conducted cell line experiments. High-risk LUAD patients showed increased mortality risk and shorter survival (P < 0.001). Senescence-related gene analysis indicated differences in protein phosphorylation and DNA methylation between normal individuals and LUAD patients. The high-risk group showed a positive association with PD-L1 expression (P = 0.003). Single-cell sequencing data suggested PEBP1 might significantly impact T cell infiltration. We predicted potential sensitive compounds for 12 senescence genes and found GAPDH promoted cell line proliferation. We established a novel prognostic system based on a newly identified senescence gene. High-risk patients had elevated immunosuppressive markers, and PEBP1 might influence T cell infiltration significantly. GAPDH, expressed at higher levels in tumors, could affect cancer progression. Our drug prediction model may guide treatment selection.
细胞衰老有助于癌症发病机制和免疫调节。我们使用 LASSO Cox 回归,从癌症基因组图谱(TCGA)和基因表达综合数据库(GEO)数据集中开发了一个用于肺腺癌(LUAD)的 12 基因预后特征。我们评估了基因表达、药物敏感性、免疫浸润,并进行了细胞系实验。高风险 LUAD 患者的死亡率更高,生存期更短(P<0.001)。衰老相关基因分析表明,正常个体和 LUAD 患者之间的蛋白磷酸化和 DNA 甲基化存在差异。高风险组与 PD-L1 表达呈正相关(P=0.003)。单细胞测序数据表明,PEBP1 可能显著影响 T 细胞浸润。我们预测了 12 个衰老基因的潜在敏感化合物,发现 GAPDH 促进了细胞系的增殖。我们建立了一个基于新发现的衰老基因的新的预后系统。高风险患者的免疫抑制标志物升高,PEBP1 可能显著影响 T 细胞浸润。肿瘤中高表达的 GAPDH 可能会影响癌症的进展。我们的药物预测模型可能指导治疗选择。