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推动进化:细菌分解基因沉默子以表达水平获得的基因。

Advancing evolution: Bacteria break down gene silencer to express horizontally acquired genes.

机构信息

Department of Microbial Pathogenesis, Yale School of Medicine, New Haven, Connecticut, USA.

Yale Microbial Sciences Institute, West Haven, Connecticut, USA.

出版信息

Bioessays. 2023 Oct;45(10):e2300062. doi: 10.1002/bies.202300062. Epub 2023 Aug 3.

Abstract

Horizontal gene transfer advances bacterial evolution. To benefit from horizontally acquired genes, enteric bacteria must overcome silencing caused when the widespread heat-stable nucleoid structuring (H-NS) protein binds to AT-rich horizontally acquired genes. This ability had previously been ascribed to both anti-silencing proteins outcompeting H-NS for binding to AT-rich DNA and RNA polymerase initiating transcription from alternative promoters. However, we now know that pathogenic Salmonella enterica serovar Typhimurium and commensal Escherichia coli break down H-NS when this silencer is not bound to DNA. Curiously, both species use the same protease - Lon - to destroy H-NS in distinct environments. Anti-silencing proteins promote the expression of horizontally acquired genes without binding to them by displacing H-NS from AT-rich DNA, thus leaving H-NS susceptible to proteolysis and decreasing H-NS amounts overall. Conserved amino acid sequences in the Lon protease and H-NS cleavage site suggest that diverse bacteria degrade H-NS to exploit horizontally acquired genes.

摘要

水平基因转移促进了细菌的进化。为了从水平获得的基因中获益,肠道细菌必须克服由于广泛存在的热稳定核基质结构(H-NS)蛋白与富含 AT 的水平获得基因结合而导致的沉默。这种能力以前归因于抗沉默蛋白与 H-NS 竞争结合富含 AT 的 DNA 和 RNA 聚合酶从替代启动子起始转录。然而,我们现在知道,致病性沙门氏菌血清型鼠伤寒和共生大肠杆菌在沉默因子未与 DNA 结合时会分解 H-NS。奇怪的是,这两个物种都使用相同的蛋白酶 Lon 来在不同的环境中破坏 H-NS。抗沉默蛋白通过将 H-NS 从富含 AT 的 DNA 上置换出来,促进水平获得基因的表达,而无需与它们结合,从而使 H-NS 易于蛋白水解,并降低 H-NS 的总量。Lon 蛋白酶和 H-NS 切割位点中的保守氨基酸序列表明,不同的细菌通过降解 H-NS 来利用水平获得的基因。

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