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芬兰早发性中重度特应性皮炎儿科患者中[相关基因]编码变异的相关性

Relevance of Coding Variation in And in Finnish Pediatric Patients with Early-Onset Moderate-To-Severe Atopic Dermatitis.

作者信息

Perälä Miia, Kaustio Meri, Salava Alexander, Jakkula Eveliina, Pelkonen Anna S, Saarela Janna, Remitz Anita, Mäkelä Mika J

机构信息

Skin and Allergy Hospital, Helsinki University Hospital, University of Helsinki, Helsinki, Finland.

Institute for Molecular Medicine Finland (FIMM), University of Helsinki, Helsinki, Finland.

出版信息

JID Innov. 2023 Apr 4;3(4):100203. doi: 10.1016/j.xjidi.2023.100203. eCollection 2023 Jul.

Abstract

Early-onset, persistent atopic dermatitis (AD) is proposed as a distinct subgroup that may have specific genotypic features. gene loss-of-function variants are the best known genetic factors contributing to epidermal barrier impairment and eczema severity. In a cohort of 140 Finnish children with early-onset moderate-to-severe AD, we investigated the effect of coding variation in and 13 other genes with epidermal barrier or immune function through the use of targeted amplicon sequencing and genotyping. A loss-of-function variant (Arg501Ter, Ser761fs, Arg2447Ter, or Ser3247Ter) was identified in 20 of 140 patients showing higher transepidermal water loss values than patients without these variants. Total loss-of-function variant frequency (7.14%) was significantly higher than in the general Finnish population (2.34%). When tested separately, only Arg2447Ter showed a significant association with AD ( = 0.003104). In addition, a modest association with moderate-to-severe pediatric AD was seen for rs12730241 and rs6587667 (:Gly137Glu). Loss-of-function variants, previously reported pathogenic variants, or statistically significant enrichment of nonsynonymous coding region variants were not found in the 13 candidate genes studied by amplicon sequencing. However, higher IgE and eosinophil counts were found in carriers of potentially pathogenic missense variants, suggesting that the role of variation in AD should be further investigated in larger cohorts.

摘要

早发型持续性特应性皮炎(AD)被认为是一个可能具有特定基因型特征的独特亚组。基因功能丧失变异是导致表皮屏障受损和湿疹严重程度的最知名遗传因素。在一个由140名芬兰早发型中度至重度AD儿童组成的队列中,我们通过使用靶向扩增子测序和基因分型,研究了[基因名称]以及其他13个具有表皮屏障或免疫功能的基因中的编码变异的影响。在140名患者中的20名患者中鉴定出一种[基因名称]功能丧失变异(Arg501Ter、Ser761fs、Arg2447Ter或Ser3247Ter),这些患者的经表皮水分流失值高于没有这些变异的患者。[基因名称]功能丧失变异的总频率(7.14%)显著高于芬兰普通人群(2.34%)。单独测试时,只有Arg2447Ter与AD显示出显著关联(P = 0.003104)。此外,rs12730241和rs6587667(:Gly137Glu)与中度至重度儿童AD存在适度关联。在通过扩增子测序研究的13个候选基因中未发现功能丧失变异、先前报道的致病变异或非同义编码区变异的统计学显著富集。然而,在潜在致病性[基因名称]错义变异的携带者中发现了较高的IgE和嗜酸性粒细胞计数,这表明[基因名称]变异在AD中的作用应在更大的队列中进一步研究。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9aa1/10392095/c19f2829bacc/gr1.jpg

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