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非反应性收缩网络的数值研究。

Numerical studies of unreactive contractile networks.

作者信息

Dembo M, Maltrud M, Harlow F

出版信息

Biophys J. 1986 Jul;50(1):123-37. doi: 10.1016/S0006-3495(86)83445-2.

Abstract

We present a finite difference algorithm for integrating the reactive flow model of contractile biological polymer networks on a fixed Eulerian mesh. We discuss the accuracy and limits of the algorithm. To illustrate the application of the algorithm, we carry out a family of computations involving an unreactive contractile network contained in a two-dimensional square reaction vessel. By numerical experiments using different values of the physical parameters of the model, we find that for this simple sort of system two major dynamical modes of contraction are predicted to occur. There is the squeezing type contraction in which the network contracts to a single small clump with gradual expulsion of solution material, and the rending type contraction in which the network tears itself into a number of separate pieces. We find that to a good approximation the transition between the squeezing mode and the rending mode is controlled by a single nondimensional number (the rending number). We discuss the relevance of these results for the analysis of various experimental observations.

摘要

我们提出了一种有限差分算法,用于在固定的欧拉网格上对收缩性生物聚合物网络的反应流模型进行积分。我们讨论了该算法的精度和局限性。为了说明该算法的应用,我们进行了一系列计算,涉及包含在二维方形反应容器中的无反应收缩网络。通过使用模型物理参数的不同值进行数值实验,我们发现对于这种简单的系统,预计会出现两种主要的收缩动力学模式。一种是挤压型收缩,网络收缩成单个小团块,同时溶液物质逐渐排出;另一种是撕裂型收缩,网络将自身撕裂成多个单独的碎片。我们发现,挤压模式和撕裂模式之间的转变在很好的近似下由一个无量纲数(撕裂数)控制。我们讨论了这些结果与各种实验观察分析的相关性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f577/1329665/f2895c862053/biophysj00177-0120-a.jpg

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