Peerapen Paleerath, Boonmark Wanida, Thongboonkerd Visith
Medical Proteomics Unit, Research Department, Faculty of Medicine Siriraj Hospital, Mahidol University, Bangkok 10700, Thailand.
Comput Struct Biotechnol J. 2023 Jul 29;21:3796-3809. doi: 10.1016/j.csbj.2023.07.037. eCollection 2023.
Annexin A1 (ANXA1) is a multifunctional calcium-binding protein that can bind to membrane phospholipids. Under high-calcium condition, ANXA1 expression increases on renal epithelial cell surface, leading to enhanced adhesion of calcium oxalate (CaOx) crystal (stone material) onto the cells. To regulate various cellular processes, ANXA1 interacts with many other intracellular protein partners. However, components of the ANXA1-interacting protein complex remain unclear. Herein, we characterized the interacting complexes of apical membrane (ApANXA1) and cytosolic (cyANXA1) forms of ANXA1 in apical membrane and cytosolic compartments, respectively, of renal epithelial cells under high-calcium condition using proteomic and bioinformatic approaches. After fractionation, the ApANXA1- and CyANXA1-interacting partners were identified by immunoprecipitation followed by nanoLC‑ESI‑Qq-TOF tandem mass spectrometry (IP-MS/MS). The ANXA1-interacting partners that were common in both apical membrane and cytosolic compartments and those unique in each compartment were then analyzed for their physico-chemical properties (molecular weight, isoelectric point, amino acid contents, instability index, aliphatic index, and grand average of hydropathicity), secondary structure (α-helix, β-turn, random coil, and extended strand), molecular functions, biological processes, reactome pathways and KEGG pathways. The data demonstrated that each set of these interacting proteins exhibited common and unique characteristics and properties. The knowledge from this study may lead to better understanding of the ApANXA1 and CyAXNA1 biochemistry and functions as well as the pathophysiology of CaOx kidney stone formation induced by high-calcium condition.
膜联蛋白A1(ANXA1)是一种多功能钙结合蛋白,可与膜磷脂结合。在高钙条件下,ANXA1在肾上皮细胞表面的表达增加,导致草酸钙(CaOx)晶体(结石成分)在细胞上的黏附增强。为调节各种细胞过程,ANXA1与许多其他细胞内蛋白伙伴相互作用。然而,ANXA1相互作用蛋白复合物的组成成分仍不清楚。在此,我们采用蛋白质组学和生物信息学方法,分别对高钙条件下肾上皮细胞顶端膜和胞质区室中ANXA1的顶端膜形式(ApANXA1)和胞质形式(cyANXA1)的相互作用复合物进行了表征。分级分离后,通过免疫沉淀,随后进行纳升液相色谱-电喷雾-四极杆飞行时间串联质谱(IP-MS/MS),鉴定ApANXA1和CyANXA1的相互作用伙伴。然后分析顶端膜和胞质区室中共同的以及每个区室中独特的ANXA1相互作用伙伴的物理化学性质(分子量、等电点、氨基酸含量、不稳定指数、脂肪族指数和总亲水性平均值)、二级结构(α螺旋、β转角、无规卷曲和延伸链)、分子功能、生物学过程、反应组途径和KEGG途径。数据表明,每组这些相互作用蛋白都表现出共同和独特的特征与性质。这项研究所得出的知识可能有助于更好地理解ApANXA1和CyAXNA1的生物化学和功能,以及高钙条件诱导的CaOx肾结石形成的病理生理学。