Department of Neurosurgery, The First Affiliated Hospital of Xi'an JiaotongUniversity, Xi'an, 710061, Shaanxi, China.
Center for Brain Science, The First Affiliated Hospital of Xi'an Jiaotong University, Xi'an, 710061, Shaanxi, China.
J Mol Neurosci. 2023 Aug;73(7-8):649-663. doi: 10.1007/s12031-023-02147-6. Epub 2023 Aug 11.
Pyroptosis, an orchestrated cellular death pathway, has gained attention due to its role in the pathophysiology and evolution of numerous malignancies. Despite this, no robust quantitative measure of pyroptosis activity in lower-grade glioma (LGG) exists currently. We scrutinized the transcriptomic data of LGG specimens acquired from TCGA and CGGA repositories, juxtaposed with the expression patterns of healthy brain tissues from the GTEx database. A register of pyroptosis-associated genes was extracted from the GSEA database. Utilizing unsupervised clustering algorithms on the expression patterns of these genes, we stratified LGG samples into unique subgroups. We implemented the Boruta machine learning algorithm to discern representative variables for each pyroptosis subtype and applied principal component analysis (PCA) to condense the dimensionality of the feature gene expression data, which led to the formulation of a pyroptosis scoring system (P score) to estimate pyroptosis activity in LGG. Furthermore, we affirmed the capacity of the P score to discriminate diverse cell subpopulations within a single-cell database and explored the correlations between the P score and clinical attributes, prognostic implications, and the tumor immune microenvironment in LGG. We identified three distinctive pyroptosis patterns with significant correlations to patient survival, clinicopathological properties, and characteristics of the tumor immune microenvironment (TIME). Two gene clusters, associated with unique prognostic and TIME attributes, emerged from differentially expressed genes (DEGs) across the pyroptosis patterns. The P score was formulated and authenticated as an autonomous prognostic determinant for overall survival in the TCGA and CGGA cohorts. Additionally, the P score demonstrated its competency to quantitatively represent pyroptosis activity across different cellular subpopulations in single-cell data. Notably, the P score in LGG was found to be indicative of tumor stemness and could serve as a predictive biomarker for the efficacy of temozolomide treatment and immunotherapy, underscoring its potential clinical utility. Our investigation pioneers a novel pyroptosis-centric scoring system with significant prognostic implications. The P score holds promise as a potential predictive biomarker for the response to chemotherapy and immunotherapy, facilitating the development of personalized therapeutic approaches in LGG patients.
细胞焦亡是一种精心调控的细胞死亡途径,由于其在众多恶性肿瘤的病理生理学和演化中的作用而受到关注。尽管如此,目前在低级别胶质瘤 (LGG) 中还没有一种稳健的焦亡活性的定量测量方法。我们仔细研究了从 TCGA 和 CGGA 存储库获取的 LGG 标本的转录组数据,并与 GTEx 数据库中健康脑组织的表达模式进行了对比。从 GSEA 数据库中提取了与细胞焦亡相关的基因列表。我们利用这些基因的表达模式的无监督聚类算法,将 LGG 样本分为独特的亚组。我们实施了 Boruta 机器学习算法来辨别每个焦亡亚型的代表性变量,并应用主成分分析 (PCA) 来压缩特征基因表达数据的维度,从而制定了一个焦亡评分系统 (P 评分) 来估计 LGG 中的焦亡活性。此外,我们证实了 P 评分能够区分单细胞数据库中的不同细胞亚群,并探索了 P 评分与临床特征、预后意义以及 LGG 中的肿瘤免疫微环境之间的相关性。我们确定了三种具有显著相关性的焦亡模式,与患者生存、临床病理特征和肿瘤免疫微环境 (TIME) 有关。两个与独特的预后和 TIME 属性相关的基因簇从焦亡模式的差异表达基因 (DEG) 中出现。P 评分是根据 TCGA 和 CGGA 队列中的总生存期而制定和验证的自主预后决定因素。此外,P 评分在单细胞数据中表现出了其在不同细胞亚群中定量表示焦亡活性的能力。值得注意的是,LGG 中的 P 评分与肿瘤干性有关,可以作为替莫唑胺治疗和免疫治疗疗效的预测生物标志物,凸显了其潜在的临床应用价值。我们的研究开创了一种具有重要预后意义的新型以焦亡为中心的评分系统。P 评分有望成为化疗和免疫治疗反应的潜在预测生物标志物,为 LGG 患者的个体化治疗方法的发展提供了便利。