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Ga···C三中心两电子键——为何它们不足以强大到将三角构型转变为四面体构型:对晶体结构中出现的二聚体的密度泛函理论计算

Ga···C Triel Bonds-Why They Are Not Strong Enough to Change Trigonal Configuration into Tetrahedral One: DFT Calculations on Dimers That Occur in Crystal Structures.

作者信息

Grabowski Sławomir J

机构信息

Polimero eta Material Aurreratuak: Fisika, Kimika eta Teknologia, Kimika Fakultatea, Euskal Herriko Unibertsitatea UPV/EHU & Donostia International Physics Center (DIPC) PK 1072, 20080 Donostia, Spain.

Ikerbasque, Basque Foundation for Science, 48011 Bilbao, Spain.

出版信息

Int J Mol Sci. 2023 Jul 30;24(15):12212. doi: 10.3390/ijms241512212.

Abstract

Structures characterized by the trigonal coordination of the gallium center that interacts with electron rich carbon sites are described. These interactions may be classified as Ga···C triel bonds. Their properties are analyzed in this study since these interactions may be important in numerous chemical processes including catalytical activities; additionally, geometrical parameters of corresponding species are described. The Ga···C triel bonds discussed here, categorized also as the π-hole bonds, do not change the trigonal configuration of the gallium center into the tetrahedral one despite total interactions in dimers being strong; however, the main contribution to the stabilization of corresponding structures comes from the electrostatic forces. The systems analyzed theoretically here come from crystal structures since the Cambridge Structural Database, CSD, search was performed to find structures where the gallium center linked to CC bonds of Lewis base units occurs. The majority structures found in CSD are characterized by parallel, stacking-like arrangements of species containing the Ga-centers. The theoretical results show that interactions within dimers are not classified as the three-centers links as in a case of typical hydrogen bonds and numerous other interactions. The total interactions in dimers analyzed here consist of several local intermolecular atom-atom interactions; these are mainly the Ga···C links. The DFT results are supported in this study by calculations with the use of the quantum theory of atoms in molecules, QTAIM, the natural bond orbital, NBO, and the energy decomposition analysis, EDA, approaches.

摘要

描述了以与富电子碳位点相互作用的镓中心的三角配位为特征的结构。这些相互作用可归类为Ga···C三电子键。本研究对它们的性质进行了分析,因为这些相互作用在包括催化活性在内的众多化学过程中可能很重要;此外,还描述了相应物种的几何参数。这里讨论的Ga···C三电子键,也归类为π-空穴键,尽管二聚体中的总相互作用很强,但不会将镓中心的三角构型改变为四面体构型;然而,对相应结构稳定性的主要贡献来自静电力。这里理论分析的体系来自晶体结构,因为进行了剑桥结构数据库(CSD)搜索,以找到镓中心与路易斯碱单元的CC键相连的结构。在CSD中发现的大多数结构的特征是含有镓中心的物种呈平行、堆积状排列。理论结果表明,二聚体内的相互作用不像典型氢键和许多其他相互作用那样归类为三中心键。这里分析的二聚体中的总相互作用由几个局域分子间原子-原子相互作用组成;这些主要是Ga···C键。在本研究中,密度泛函理论(DFT)结果得到了使用分子中的原子量子理论(QTAIM)、自然键轨道(NBO)和能量分解分析(EDA)方法进行的计算的支持。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9920/10418643/d69c40bf19aa/ijms-24-12212-g001.jpg

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