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人工小分子作为合成生物学中的辅助因子和生物大分子构建模块:设计、合成、应用和挑战。

Artificial Small Molecules as Cofactors and Biomacromolecular Building Blocks in Synthetic Biology: Design, Synthesis, Applications, and Challenges.

机构信息

CAS Key Laboratory of Biofuels, Shandong Provincial Key Laboratory of Synthetic Biology, Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences, 189 Songling Road, Qingdao 266101, China.

Shandong Energy Institute, 189 Songling Road, Qingdao 266101, China.

出版信息

Molecules. 2023 Aug 3;28(15):5850. doi: 10.3390/molecules28155850.

DOI:10.3390/molecules28155850
PMID:37570818
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10421094/
Abstract

Enzymes are essential catalysts for various chemical reactions in biological systems and often rely on metal ions or cofactors to stabilize their structure or perform functions. Improving enzyme performance has always been an important direction of protein engineering. In recent years, various artificial small molecules have been successfully used in enzyme engineering. The types of enzymatic reactions and metabolic pathways in cells can be expanded by the incorporation of these artificial small molecules either as cofactors or as building blocks of proteins and nucleic acids, which greatly promotes the development and application of biotechnology. In this review, we summarized research on artificial small molecules including biological metal cluster mimics, coenzyme analogs (mNADs), designer cofactors, non-natural nucleotides (XNAs), and non-natural amino acids (nnAAs), focusing on their design, synthesis, and applications as well as the current challenges in synthetic biology.

摘要

酶是生物系统中各种化学反应的重要催化剂,通常依赖金属离子或辅因子来稳定其结构或发挥功能。提高酶的性能一直是蛋白质工程的重要方向。近年来,各种人工小分子已成功应用于酶工程。通过将这些人工小分子作为辅因子或作为蛋白质和核酸的构建块掺入,可以扩展细胞中酶促反应和代谢途径,极大地促进了生物技术的发展和应用。在这篇综述中,我们总结了人工小分子的研究,包括生物金属簇模拟物、辅酶类似物(mNADs)、设计辅因子、非天然核苷酸(XNAs)和非天然氨基酸(nnAAs),重点介绍了它们的设计、合成和应用以及合成生物学中的当前挑战。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a280/10421094/a424c8ab0771/molecules-28-05850-g009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a280/10421094/352b0c3ca03b/molecules-28-05850-g001.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a280/10421094/eb6ba4a4f17f/molecules-28-05850-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a280/10421094/af7edd532421/molecules-28-05850-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a280/10421094/44ae1afb56a6/molecules-28-05850-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a280/10421094/b852b0a63c1e/molecules-28-05850-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a280/10421094/713127fc7e7f/molecules-28-05850-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a280/10421094/a424c8ab0771/molecules-28-05850-g009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a280/10421094/352b0c3ca03b/molecules-28-05850-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a280/10421094/430ad205fff3/molecules-28-05850-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a280/10421094/13e2ed305f74/molecules-28-05850-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a280/10421094/eb6ba4a4f17f/molecules-28-05850-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a280/10421094/af7edd532421/molecules-28-05850-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a280/10421094/44ae1afb56a6/molecules-28-05850-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a280/10421094/b852b0a63c1e/molecules-28-05850-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a280/10421094/713127fc7e7f/molecules-28-05850-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a280/10421094/a424c8ab0771/molecules-28-05850-g009.jpg

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本文引用的文献

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Enabling Peroxygenase Activity in Cytochrome P450 Monooxygenases by Engineering Hydrogen Peroxide Tunnels.通过工程化过氧化氢隧道来实现细胞色素 P450 单加氧酶的过氧酶活性。
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Hydrogenase and Nitrogenase: Key Catalysts in Biohydrogen Production.
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Engineering Cytochrome P450BM3 Enzymes for Direct Nitration of Unsaturated Hydrocarbons.用于不饱和烃直接硝化的工程化细胞色素P450BM3酶
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Regiodivergent and Enantioselective Hydroxylation of C-H bonds by Synergistic Use of Protein Engineering and Exogenous Dual-Functional Small Molecules.通过蛋白质工程和外源性双功能小分子的协同作用实现 C-H 键的区域发散和对映选择性羟化。
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