Bayard Christina J, Yingling Yaroslava G
Department of Materials Science and Engineering, North Carolina State University, Raleigh, NC, USA.
Methods Mol Biol. 2023;2709:31-49. doi: 10.1007/978-1-0716-3417-2_2.
Molecular dynamics (MD) simulations can aid in the design and characterization of RNA nanomaterials, providing details about structural and dynamical properties as a function of sequence and environment. Here, we describe how to perform explicit and implicit solvent all-atom MD simulations for RNA nanoring systems.
分子动力学(MD)模拟有助于RNA纳米材料的设计与表征,能够提供有关结构和动力学性质随序列与环境变化的详细信息。在此,我们描述如何针对RNA纳米环系统进行显式和隐式溶剂全原子MD模拟。