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微聚焦电子衍射作为一种强大的工具,可直接从大环药物化合物的粉末制剂中确定其结构。

MicroED as a powerful tool for structure determination of macrocyclic drug compounds directly from their powder formulations.

作者信息

Danelius E, Bu G, Wieske H, Gonen T

机构信息

Howard Hughes Medical Institute, University of California Los Angeles, Los Angeles, CA 90095, USA.

Department of Biological Chemistry, University of California Los Angeles, 615 Charles E.Young Drive South, Los Angeles, CA 90095, USA.

出版信息

bioRxiv. 2023 Aug 1:2023.07.31.551405. doi: 10.1101/2023.07.31.551405.

Abstract

Macrocycles are important drug leads with many advantages including the ability to target flat and featureless binding sites as well as act as molecular chameleons and thereby reach intracellular targets. However, due to their complex structures and inherent flexibility, macrocycles are difficult to study structurally and there are limited structural data available. Herein, we use the cryo-EM method MicroED to determine the novel atomic structures of several macrocycles which have previously resisted structural determination. We show that structures of similar complexity can now be obtained rapidly from nanograms of material, and that different conformations of flexible compounds can be derived from the same experiment. These results will have impact on contemporary drug discovery as well as natural product exploration.

摘要

大环化合物是重要的药物先导物,具有诸多优势,包括能够靶向平坦且无特征的结合位点,以及充当分子变色龙从而作用于细胞内靶点。然而,由于其结构复杂且具有内在的灵活性,大环化合物在结构研究方面存在困难,可用的结构数据有限。在此,我们使用低温电子显微镜方法MicroED来确定几种先前难以进行结构测定的大环化合物的新颖原子结构。我们表明,现在可以从纳克级的材料中快速获得类似复杂程度的结构,并且可以从同一实验中得到柔性化合物的不同构象。这些结果将对当代药物发现以及天然产物探索产生影响。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/834e/10418104/3881d86cb410/nihpp-2023.07.31.551405v1-f0001.jpg

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