Wang Xiwei, Chen Can, Wang Dawei
College of Forestry, Southwest Forestry University, Kunming 650224, Yunnan, China.
Sheng Wu Gong Cheng Xue Bao. 2023 Jul 25;39(7):2897-2913. doi: 10.13345/j.cjb.221034.
-box gene family is a significant transcription factor family that plays a crucial role in regulating plant growth, development, signal transduction, and other processes. In order to study the characteristics of -box gene family in (Franch.) Schneid. and its expression during different stages of seed germination, this study used seedlings at different stages of germination as materials and screened -box transcription factors from the transcriptome database of . using bioinformatics methods based on transcriptome sequencing. The physical and chemical properties, protein conservative motifs, phylogenetic evolution, and expression patterns of the -box transcription factors were analyzed. Quantitative real-time PCR (qRT-PCR) was used to verify the expression of -box gene family members during different stages of seed germination in . . The results showed that 81 genes of -box gene family were identified from the transcriptome data of . , with the molecular weight distribution ranged of 6 211.34-173 512.77 Da and the theoretical isoelectric point ranged from 5.21 to 10.97. Phylogenetic analysis showed that the 81 genes could be divided into 15 subgroups, among which , , , , , , , and might be involved in the regulation of ovule development in . . The combination of the transcriptome data and the qRT-PCR analysis results of . seeds indicated that and might be involved in the regulation of seed development, and that and might have negative regulation effects on seed dormancy. Previous studies have reported that the subgroup is mainly involved in regulating flower organ development. For the first time, we found that the transcription factors of the subgroup exhibited a high expression level at the early stage of seed germination, so we speculated that the subgroup played a regulatory role in the process of seed germination. To verify the accuracy of this speculation, we selected and from the subgroup for qRT-PCR experiments, and the experimental results were consistent with the expression trend of transcriptome sequencing. This study provides a reference for further research on the biological function of . -box gene family from the perspective of molecular evolution.
-box基因家族是一个重要的转录因子家族,在调控植物生长、发育、信号转导等过程中发挥着关键作用。为了研究(Franch.) Schneid.中-box基因家族的特征及其在种子萌发不同阶段的表达情况,本研究以不同萌发阶段的幼苗为材料,基于转录组测序,利用生物信息学方法从.的转录组数据库中筛选-box转录因子。分析了-box转录因子的理化性质、蛋白质保守基序、系统发育进化及表达模式。采用定量实时PCR(qRT-PCR)验证了.种子萌发不同阶段-box基因家族成员的表达。结果表明,从.的转录组数据中鉴定出81个-box基因家族成员,分子量分布范围为6 211.34-173 512.77 Da,理论等电点范围为5.21至10.97。系统发育分析表明,81个基因可分为15个亚组,其中,,,,,,,和可能参与了.胚珠发育的调控。.种子的转录组数据与qRT-PCR分析结果相结合表明,和可能参与种子发育的调控,而和可能对种子休眠有负调控作用。先前的研究报道,亚组主要参与花器官发育的调控。我们首次发现,亚组的转录因子在种子萌发早期表现出高表达水平,因此推测亚组在种子萌发过程中发挥调控作用。为了验证这一推测的准确性,我们从亚组中选择和进行qRT-PCR实验,实验结果与转录组测序的表达趋势一致。本研究从分子进化的角度为进一步研究.-box基因家族的生物学功能提供了参考。