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利用机器学习识别药物相互作用。

Identifying drug interactions using machine learning.

机构信息

Department of Computer Engineering, Faculty of Engineering, Uşak University, Turkey.

Department of Biostatistics and Medical Informatics, Suleyman Demirel University, Isparta, Turkey.

出版信息

Adv Clin Exp Med. 2023 Aug;32(8):829-838. doi: 10.17219/acem/169852.

DOI:10.17219/acem/169852
PMID:37589227
Abstract

The majority of Americans, accounting for 51% of the population, take 2 or more drugs daily. Unfortunately, nearly 100,000 people die annually as a result of adverse drug reactions (ADRs), making it the 4th most common cause of mortality in the USA. Drug-drug interactions (DDls) and their impact on patients represent critical challenges for the healthcare system. To reduce the incidence of ADRs, this study focuses on identifying DDls using a machine-learning approach. Drug-related information was obtained from various free databases, including DrugBank, BioGRID and Comparative Toxicogenomics Database. Eight similarity matrices between drugs were created as covariates in the model in order to assess their infiuence on DDls. Three distinct machine learning algorithms were considered, namely, logistic regression (LR), extreme Gradient Boosting (XGBoost) and neural network (NN). Our study examined 22 notable drugs and their interactions with 841 other drugs from DrugBank. The accuracy of the machine learning approaches ranged from 68% to 78%, while the F1 scores ranged from 78% to 83%. Our study indicates that enzyme and target similarity are the most significant parameters in identifying DDls. Finally, our data-driven approach reveals that machine learning methods can accurately predict DDls and provide additional insights in a timely and cost-effective manner.

摘要

大多数美国人(占总人口的 51%)每天服用 2 种或更多种药物。不幸的是,每年有近 10 万人因药物不良反应(ADR)而死亡,使其成为美国第四大常见死因。药物-药物相互作用(DDI)及其对患者的影响是医疗保健系统面临的重大挑战。为了降低 ADR 的发生率,本研究使用机器学习方法来确定 DDI。药物相关信息从各种免费数据库中获得,包括 DrugBank、BioGRID 和 Comparative Toxicogenomics Database。为了评估它们对 DDI 的影响,在模型中创建了 8 种药物之间的相似性矩阵作为协变量。考虑了三种不同的机器学习算法,即逻辑回归(LR)、极端梯度提升(XGBoost)和神经网络(NN)。我们的研究检查了来自 DrugBank 的 22 种重要药物及其与 841 种其他药物的相互作用。机器学习方法的准确性在 68%到 78%之间,而 F1 分数在 78%到 83%之间。我们的研究表明,酶和靶标相似性是识别 DDI 的最重要参数。最后,我们的数据驱动方法表明,机器学习方法可以准确预测 DDI,并以及时和具有成本效益的方式提供额外的见解。

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