• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

相似文献

1
Padé approximant meets federated learning: A nearly lossless, one-shot algorithm for evidence synthesis in distributed research networks with rare outcomes.Padé 逼近与联邦学习相遇:一种用于稀有结局分布式研究网络中证据综合的近乎无损、单次算法。
J Biomed Inform. 2023 Sep;145:104476. doi: 10.1016/j.jbi.2023.104476. Epub 2023 Aug 19.
2
Learning from local to global: An efficient distributed algorithm for modeling time-to-event data.从局部到全局学习:一种用于建模事件时间数据的高效分布式算法。
J Am Med Inform Assoc. 2020 Jul 1;27(7):1028-1036. doi: 10.1093/jamia/ocaa044.
3
Distributed Quasi-Poisson regression algorithm for modeling multi-site count outcomes in distributed data networks.分布式准泊松回归算法在分布式数据网络中对多点计数结果进行建模。
J Biomed Inform. 2022 Jul;131:104097. doi: 10.1016/j.jbi.2022.104097. Epub 2022 May 25.
4
Learning competing risks across multiple hospitals: one-shot distributed algorithms.在多家医院学习竞争风险:单次分布式算法。
J Am Med Inform Assoc. 2024 Apr 19;31(5):1102-1112. doi: 10.1093/jamia/ocae027.
5
One-shot distributed algorithms for addressing heterogeneity in competing risks data across clinical sites.单步分布式算法用于解决临床站点间竞争风险数据的异质性。
J Biomed Inform. 2024 Feb;150:104595. doi: 10.1016/j.jbi.2024.104595. Epub 2024 Jan 18.
6
Robust quantification of short echo time 1H magnetic resonance spectra using the Padé approximant.使用帕德近似对短回波时间1H磁共振波谱进行稳健定量分析。
Magn Reson Med. 2006 Apr;55(4):762-71. doi: 10.1002/mrm.20842.
7
Learning from electronic health records across multiple sites: A communication-efficient and privacy-preserving distributed algorithm.从多个站点的电子健康记录中学习:一种通信高效且隐私保护的分布式算法。
J Am Med Inform Assoc. 2020 Mar 1;27(3):376-385. doi: 10.1093/jamia/ocz199.
8
ODACH: a one-shot distributed algorithm for Cox model with heterogeneous multi-center data.ODACH:一种用于异质多中心 Cox 模型的单步分布式算法。
Sci Rep. 2022 Apr 22;12(1):6627. doi: 10.1038/s41598-022-09069-0.
9
An efficient and accurate distributed learning algorithm for modeling multi-site zero-inflated count outcomes.一种高效准确的分布式学习算法,用于对多站点零膨胀计数结果进行建模。
Sci Rep. 2021 Oct 4;11(1):19647. doi: 10.1038/s41598-021-99078-2.
10
On Padé approximants to virial series.关于维里级数的帕德近似。
J Chem Phys. 2008 Jul 28;129(4):044509. doi: 10.1063/1.2958914.

本文引用的文献

1
Adjusting for indirectly measured confounding using large-scale propensity score.利用大规模倾向评分调整间接测量混杂。
J Biomed Inform. 2022 Oct;134:104204. doi: 10.1016/j.jbi.2022.104204. Epub 2022 Sep 13.
2
ODACH: a one-shot distributed algorithm for Cox model with heterogeneous multi-center data.ODACH:一种用于异质多中心 Cox 模型的单步分布式算法。
Sci Rep. 2022 Apr 22;12(1):6627. doi: 10.1038/s41598-022-09069-0.
3
Combining cox regressions across a heterogeneous distributed research network facing small and zero counts.在面对小计数和零计数的异构分布式研究网络中合并Cox回归。
Stat Methods Med Res. 2022 Mar;31(3):438-450. doi: 10.1177/09622802211060518. Epub 2021 Nov 29.
4
Utility of Restricted Mean Survival Time Analysis for Heart Failure Clinical Trial Evaluation and Interpretation.限制平均生存时间分析在心力衰竭临床试验评估和解释中的应用。
JACC Heart Fail. 2020 Dec;8(12):973-983. doi: 10.1016/j.jchf.2020.07.005. Epub 2020 Oct 7.
5
Learning from local to global: An efficient distributed algorithm for modeling time-to-event data.从局部到全局学习:一种用于建模事件时间数据的高效分布式算法。
J Am Med Inform Assoc. 2020 Jul 1;27(7):1028-1036. doi: 10.1093/jamia/ocaa044.
6
Comprehensive comparative effectiveness and safety of first-line antihypertensive drug classes: a systematic, multinational, large-scale analysis.一线降压药类别全面比较效果和安全性:系统的、多国的、大规模分析。
Lancet. 2019 Nov 16;394(10211):1816-1826. doi: 10.1016/S0140-6736(19)32317-7. Epub 2019 Oct 24.
7
Using the Restricted Mean Survival Time Difference as an Alternative to the Hazard Ratio for Analyzing Clinical Cardiovascular Studies.使用受限平均生存时间差替代风险比来分析临床心血管研究。
Circulation. 2019 Oct 22;140(17):1366-1368. doi: 10.1161/CIRCULATIONAHA.119.040680. Epub 2019 Oct 21.
8
Inverse probability weighted Cox model in multi-site studies without sharing individual-level data.多中心研究中不共享个体水平数据的逆概率加权Cox模型
Stat Methods Med Res. 2020 Jun;29(6):1668-1681. doi: 10.1177/0962280219869742. Epub 2019 Aug 26.
9
Bayesian phylogenetic and phylodynamic data integration using BEAST 1.10.使用BEAST 1.10进行贝叶斯系统发育和系统动力学数据整合。
Virus Evol. 2018 Jun 8;4(1):vey016. doi: 10.1093/ve/vey016. eCollection 2018 Jan.
10
Evaluating large-scale propensity score performance through real-world and synthetic data experiments.通过真实数据和合成数据实验评估大规模倾向评分性能。
Int J Epidemiol. 2018 Dec 1;47(6):2005-2014. doi: 10.1093/ije/dyy120.

Padé 逼近与联邦学习相遇:一种用于稀有结局分布式研究网络中证据综合的近乎无损、单次算法。

Padé approximant meets federated learning: A nearly lossless, one-shot algorithm for evidence synthesis in distributed research networks with rare outcomes.

机构信息

Department of Biostatistics, Epidemiology and Informatics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, United States of America.

Observational Health Data Sciences and Informatics, New York, NY, United States of America; Janssen Research & Development, Titusville, NJ, United States of America; Department of Biostatistics, University of California, Los Angeles, CA, United States of America.

出版信息

J Biomed Inform. 2023 Sep;145:104476. doi: 10.1016/j.jbi.2023.104476. Epub 2023 Aug 19.

DOI:10.1016/j.jbi.2023.104476
PMID:37598737
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11056245/
Abstract

OBJECTIVE

We developed and evaluated a novel one-shot distributed algorithm for evidence synthesis in distributed research networks with rare outcomes.

MATERIALS AND METHODS

Fed-Padé, motivated by a classic mathematical tool, Padé approximants, reconstructs the multi-site data likelihood via Padé approximant whose key parameters can be computed distributively. Thanks to the simplicity of [2,2] Padé approximant, Fed-Padé requests an extremely simple task and low communication cost for data partners. Specifically, each data partner only needs to compute and share the log-likelihood and its first 4 gradients evaluated at an initial estimator. We evaluated the performance of our algorithm with extensive simulation studies and four observational healthcare databases.

RESULTS

Our simulation studies revealed that a [2,2]-Padé approximant can well reconstruct the multi-site likelihood so that Fed-Padé produces nearly identical estimates to the pooled analysis. Across all simulation scenarios considered, the median of relative bias and rate of instability of our Fed-Padé are both <0.1%, whereas meta-analysis estimates have bias up to 50% and instability up to 75%. Furthermore, the confidence intervals derived from the Fed-Padé algorithm showed better coverage of the truth than confidence intervals based on the meta-analysis. In real data analysis, the Fed-Padé has a relative bias of <1% for all three comparisons for risks of acute liver injury and decreased libido, whereas the meta-analysis estimates have a substantially higher bias (around 10%).

CONCLUSION

The Fed-Padé algorithm is nearly lossless, stable, communication-efficient, and easy to implement for models with rare outcomes. It provides an extremely suitable and convenient approach for synthesizing evidence in distributed research networks with rare outcomes.

摘要

目的

我们开发并评估了一种新颖的、适用于稀有结局的分布式研究网络中证据综合的单步分布式算法。

材料与方法

Fed-Padé 受到经典数学工具 Padé 逼近的启发,通过 Padé 逼近重构多站点数据似然,其关键参数可以分布式计算。由于 [2,2] Padé 逼近的简单性,Fed-Padé 为数据合作伙伴提出了一个极其简单的任务和低通信成本要求。具体来说,每个数据合作伙伴只需要计算和共享在初始估计器处评估的对数似然及其前 4 个梯度。我们通过广泛的模拟研究和四个观察性医疗保健数据库评估了我们算法的性能。

结果

我们的模拟研究表明,[2,2] Padé 逼近可以很好地重建多站点似然,因此 Fed-Padé 产生的估计值与合并分析几乎相同。在考虑的所有模拟场景中,我们的 Fed-Padé 的中位数相对偏差和不稳定性率均<0.1%,而荟萃分析估计值的偏差高达 50%,不稳定性高达 75%。此外,Fed-Padé 算法得出的置信区间比基于荟萃分析的置信区间更好地覆盖了真实值。在真实数据分析中,Fed-Padé 对于急性肝损伤和性欲降低风险的所有三种比较的相对偏差均<1%,而荟萃分析估计值的偏差要高得多(约 10%)。

结论

Fed-Padé 算法对于稀有结局模型几乎无损、稳定、通信效率高且易于实现。它为稀有结局的分布式研究网络中的证据综合提供了一种极其合适和方便的方法。