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鉴定 ESM1 为一种潜在的生物标志物,涉及药物敏感性和肿瘤免疫微环境,促进黑色素瘤的增殖。

Identification of ESM1 as a Potential Biomarker Involving Drug Sensitivity and the Tumor Immune Microenvironment that Promotes Proliferation of Melanoma.

机构信息

Department of Dermatology, Affiliated Hospital of Qingdao University, Qingdao, Shandong, China.

出版信息

Cell Mol Biol (Noisy-le-grand). 2023 Jun 30;69(6):160-167. doi: 10.14715/cmb/2023.69.6.24.


DOI:10.14715/cmb/2023.69.6.24
PMID:37605575
Abstract

ESM1 may play a role in human cancers, but its role in melanoma remains unclear. This study investigated ESM1 expression in Cancer Genome Atlas (TCGA) and Gene Expression Omnibus (GEO) databases and confirmed it through immunohistochemistry (IHC) and Western blotting (WB). Using the ESM1 gene expression levels, we divided TCGA samples into high and low-expression groups and identified differentially expressed genes (DEGs) between them. We then performed GO and KEGG enrichment analyses on these DEGs and explored the immune landscape while identifying anti-tumor drugs. ESM1 was found to be highly expressed in metastatic melanoma compared to primary melanoma and normal tissues. This was associated with increased numbers of immune-related cells and genes, as well as the activation of tumor progression pathways such as Notch and Wnt. In the high ESM1 expression group, the number of multiple immune-related cells and the expression of immune-related genes correlated with the presentation of ESM1, as well as the agonism of pathways related to tumor progressions. Immunohistochemistry and WB demonstrated a significant increase in ESM1 expression in metastatic lesions. Multiple GEO datasets showed higher ESM1 mRNA expression in malignant melanoma than in other benign tumors. ESM1 knockdown in a mouse model reduced tumor volume and weight related to the Wnt/-catenin and NOTCH signaling pathways. So, ESM1 is a promising biomarker for drug sensitivity, the tumor immune microenvironment, and the proliferation of cutaneous melanoma.

摘要

ESM1 可能在人类癌症中发挥作用,但在黑色素瘤中的作用尚不清楚。本研究通过免疫组织化学(IHC)和 Western blot(WB)在癌症基因组图谱(TCGA)和基因表达综合(GEO)数据库中研究了 ESM1 的表达,并对其进行了验证。使用 ESM1 基因表达水平,我们将 TCGA 样本分为高表达和低表达组,并确定了它们之间差异表达的基因(DEGs)。然后,我们对这些 DEGs 进行了 GO 和 KEGG 富集分析,并在识别抗肿瘤药物的同时探索了免疫景观。与原发性黑色素瘤和正常组织相比,转移性黑色素瘤中 ESM1 的表达水平较高。这与免疫相关细胞和基因数量的增加以及 Notch 和 Wnt 等肿瘤进展途径的激活有关。在高 ESM1 表达组中,多种免疫相关细胞的数量和免疫相关基因的表达与 ESM1 的表达以及与肿瘤进展相关的途径的激动作用相关。免疫组织化学和 WB 显示转移性病变中 ESM1 表达显著增加。多个 GEO 数据集显示恶性黑色素瘤中 ESM1 mRNA 表达高于其他良性肿瘤。在小鼠模型中敲低 ESM1 可减少与 Wnt/-catenin 和 NOTCH 信号通路相关的肿瘤体积和重量。因此,ESM1 是药物敏感性、肿瘤免疫微环境和皮肤黑色素瘤增殖的有前途的生物标志物。

相似文献

[1]
Identification of ESM1 as a Potential Biomarker Involving Drug Sensitivity and the Tumor Immune Microenvironment that Promotes Proliferation of Melanoma.

Cell Mol Biol (Noisy-le-grand). 2023-6-30

[2]
Pan-cancer analysis identifies ESM1 as a novel oncogene for esophageal cancer.

Esophagus. 2021-4

[3]
Aspartate beta-hydroxylase domain containing 1 as a prognostic marker associated with immune infiltration in skin cutaneous melanoma.

BMC Cancer. 2023-3-31

[4]
Validation of ESM1 Related to Ovarian Cancer and the Biological Function and Prognostic Significance.

Int J Biol Sci. 2023

[5]
Identification of fatty acid metabolism-related molecular subtype biomarkers and their correlation with immune checkpoints in cutaneous melanoma.

Front Immunol. 2022

[6]
Functional analysis of ESM1 by siRNA knockdown in primary and metastatic head and neck cancer cells.

J Oral Pathol Med. 2017-10-30

[7]
ESM1 Is a Promising Therapeutic Target and Prognostic Indicator for Esophageal Carcinogenesis/Esophageal Squamous Cell Carcinoma.

Biomed Res Int. 2022

[8]
Data mining of immune-related prognostic genes in metastatic melanoma microenvironment.

Biosci Rep. 2020-11-27

[9]
Identifying (Gene ID: 2192) as a Potential Melanoma Biomarker for Melanoma based on an Analysis of microRNA Expression Profiles in the GEO and TCGA Databases.

Genet Test Mol Biomarkers. 2021-1

[10]
C1QA, C1QB, and GZMB are novel prognostic biomarkers of skin cutaneous melanoma relating tumor microenvironment.

Sci Rep. 2022-11-28

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