Wang Zhao-Cai, Liang Kun, Bao Xiao-Guang, Wu Tun-Hua
IEEE Trans Nanobioscience. 2024 Apr;23(2):220-232. doi: 10.1109/TNB.2023.3307458. Epub 2024 Mar 28.
DNA computing is a new pattern of computing that combines biotechnology and information technology. As a new technology born in less than three decades, it has developed at an extremely rapid rate, which can be attributed to its advantages, including high parallelism, powerful data storage capacity, and low power consumption. Nowadays, DNA computing has become one of the most popular research fields worldwide and has been effective in solving certain combinatorial optimization problems. In this study, we use the Adleman-Lipton model based on DNA computing for solving the Prize Collecting Traveling Salesman Problem (PCTSP) and demonstrate the feasibility of this model. Then, we design a simulation experiment of the model to solve some open instances of PCTSP. The results illustrate that the model can satisfactorily solve these instances. Finally, the comparison with the results of the Clustering Search algorithm and the Greedy Stochastic Adaptive Search Procedure/Variable Neighborhood Search method reveals that the optimal solutions obtained by this simulation experiment are significantly superior to those of the other two algorithms in all instances. This research also provides a method for proficiently solving additional combinatorial optimization problems.
DNA计算是一种将生物技术与信息技术相结合的新型计算模式。作为一项诞生不到三十年的新技术,它以极快的速度发展,这可归因于其优势,包括高度并行性、强大的数据存储能力和低功耗。如今,DNA计算已成为全球最热门的研究领域之一,并在解决某些组合优化问题方面取得了成效。在本研究中,我们使用基于DNA计算的阿德曼-利普顿模型来解决带权值的旅行商问题(PCTSP),并证明了该模型的可行性。然后,我们设计了该模型的模拟实验来解决PCTSP的一些公开实例。结果表明,该模型能够令人满意地解决这些实例。最后,与聚类搜索算法和贪婪随机自适应搜索过程/可变邻域搜索方法的结果进行比较,发现在所有实例中,该模拟实验获得的最优解明显优于其他两种算法。本研究还为熟练解决其他组合优化问题提供了一种方法。