Guan Wei, Xu Jiaruo, Shi Yinghan, Wang Xiuli, Gu Shaoyan, Xie Lixin
College of Pulmonary and Critical Care Medicine, Chinese PLA General Hospital, Beijing, China.
Chinese PLA Medical School, Beijing, China.
Front Med (Lausanne). 2023 Aug 7;10:1236484. doi: 10.3389/fmed.2023.1236484. eCollection 2023.
This study explored novel biomarkers for diagnosing sepsis, a severe disease prevalent in clinical settings, particularly threatening to elderly patients.
Using microarray gene expression datasets and fatty acid metabolism signatures, we identified differentially expressed genes between sepsis and healthy control groups. Correlations between candidate genes, immune cells, and immune function were assessed. Logistic regression analysis and single-gene GSEA analysis were performed to identify potential biomarkers. The biomarkers' association with different types of tumors was investigated.
Twelve genes related to fatty acid metabolism were excluded. CA4, OLAN, and VNN1 were found relevant to immune cells and function. Among these, only VNN1 showed statistical significance ( < 0.05), with a strong area under the ROC curve (0.995). High VNN1 expression indicated activation of certain metabolic pathways, while low expression suggested potential autoimmune responses. VNN1 was up-regulated in eight tumors and down-regulated in eight others. High VNN1 expression was linked to poor prognosis in six types of tumors, and low expression was linked to poor prognosis in four types of tumors. VNN1 expression showed correlations with stromal scores, immune scores, and cancer purity in different types of tumors.
VNN1 holds promise as a potential biomarker for sepsis diagnosis and is significant in identifying immune infiltration in tumor tissue and predicting tumor prognosis.
本研究探索用于诊断脓毒症的新型生物标志物,脓毒症是临床中一种常见的严重疾病,对老年患者尤其具有威胁性。
利用基因芯片基因表达数据集和脂肪酸代谢特征,我们确定了脓毒症组与健康对照组之间差异表达的基因。评估了候选基因、免疫细胞和免疫功能之间的相关性。进行逻辑回归分析和单基因基因集富集分析(GSEA)以确定潜在的生物标志物。研究了这些生物标志物与不同类型肿瘤的关联。
排除了12个与脂肪酸代谢相关的基因。发现CA4、OLAN和VNN1与免疫细胞和功能相关。其中,只有VNN1具有统计学意义(<0.05),ROC曲线下面积较大(0.995)。VNN1高表达表明某些代谢途径被激活,而低表达提示可能存在自身免疫反应。VNN1在8种肿瘤中上调,在另外8种肿瘤中下调。VNN1高表达与6种肿瘤的预后不良相关,低表达与4种肿瘤的预后不良相关。VNN1表达在不同类型肿瘤中与基质评分、免疫评分和肿瘤纯度相关。
VNN1有望成为脓毒症诊断的潜在生物标志物,在识别肿瘤组织中的免疫浸润和预测肿瘤预后方面具有重要意义。