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甾醇产生分枝杆菌的细胞内和细胞外蛋白质组的二维分析。

Bidimensional Analyses of the Intra- and Extracellular Proteomes of Steroid Producer Mycobacteria.

机构信息

Área de Bioquímica y Biología Molecular, Departamento de Biología Molecular, Facultad de Veterinaria, Universidad de León, León, Spain.

Instituto de Investigación de la Viña y el Vino, Escuela de Ingeniería Agraria, Universidad de León, León, Spain.

出版信息

Methods Mol Biol. 2023;2704:115-141. doi: 10.1007/978-1-0716-3385-4_7.

DOI:10.1007/978-1-0716-3385-4_7
PMID:37642841
Abstract

The importance of the pathogenic mycobacteria has mainly focused the omic analyses on different aspects of their clinical significance. However, those industrially relevant mycobacteria have received less attention, even though the steroid market sales in 2021 were estimated in $56.45 billion.The extracellular proteome, due to its relevance in the sterol processing and uptake, and the intracellular proteome, because of its role in steroids bioconversion, are the core of the present chapter. Both, monodimensional gels, as preparatory analysis, and bidimensional gels as proteome analysis are described. As a proof of concept, the protein extraction methods for both sub-proteomes of Mycobacterium are described. Thus, procedures and relevant key points of these proteome analyses are fully detailed.

摘要

致病分枝杆菌的重要性主要集中在它们临床意义的不同方面的组学分析上。然而,那些与工业相关的分枝杆菌受到的关注较少,尽管 2021 年类固醇市场销售额估计为 564.5 亿美元。细胞外蛋白质组由于其在甾醇加工和摄取中的相关性,以及细胞内蛋白质组由于其在类固醇生物转化中的作用,是本章的核心。本文描述了一维凝胶作为预备分析和二维凝胶作为蛋白质组分析。作为概念验证,还描述了分枝杆菌这两个亚蛋白质组的蛋白质提取方法。因此,详细说明了这两种蛋白质组分析的程序和相关要点。

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Methods Mol Biol. 2023;2704:115-141. doi: 10.1007/978-1-0716-3385-4_7.
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本文引用的文献

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Targeted RNA-Seq Reveals the Transcriptome from an In Vivo Infection Model.靶向RNA测序揭示了体内感染模型的转录组。
Biology (Basel). 2021 Aug 31;10(9):848. doi: 10.3390/biology10090848.
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New Insights on Steroid Biotechnology.类固醇生物技术的新见解。
Front Microbiol. 2018 May 15;9:958. doi: 10.3389/fmicb.2018.00958. eCollection 2018.
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RNA-Seq analysis uncovers non-coding small RNA system of Mycobacterium neoaurum in the metabolism of sterols to accumulate steroid intermediates.RNA测序分析揭示了新金色分枝杆菌在甾醇代谢中积累甾体中间体的非编码小RNA系统。
Microb Cell Fact. 2016 Apr 25;15:64. doi: 10.1186/s12934-016-0462-2.
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Complete genome sequence of 'Mycobacterium neoaurum' NRRL B-3805, an androstenedione (AD) producer for industrial biotransformation of sterols.用于甾体化合物工业生物转化的雄烯二酮(AD)生产菌“新金色分枝杆菌”NRRL B - 3805的全基因组序列
J Biotechnol. 2016 Apr 20;224:64-5. doi: 10.1016/j.jbiotec.2016.03.021. Epub 2016 Mar 14.
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Mycobacterium tuberculosis: Manipulator of Protective Immunity.结核分枝杆菌:保护性免疫的操纵者。
Int J Mol Sci. 2016 Feb 25;17(3):131. doi: 10.3390/ijms17030131.
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World Leprosy Day 2015: renewing commitment for a leprosy free world!2015年世界麻风病日:重申为实现无麻风病世界而做出的承诺!
Indian J Med Res. 2015 Jan;141(1):1-4. doi: 10.4103/0971-5916.154476.
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An introduction to protein moonlighting.蛋白质兼职现象简介。
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Microbiological features and clinical relevance of new species of the genus Mycobacterium.分枝杆菌属新物种的微生物学特征及临床相关性
Clin Microbiol Rev. 2014 Oct;27(4):727-52. doi: 10.1128/CMR.00035-14.
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Environ Microbiol Rep. 2012 Apr;4(2):168-82. doi: 10.1111/j.1758-2229.2011.00314.x. Epub 2012 Jan 12.
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A universally applicable and rapid method for measuring the growth of streptomyces and other filamentous microorganisms by methylene blue adsorption-desorption.一种普遍适用且快速的方法,通过亚甲蓝吸附-解吸来测量链霉菌和其他丝状微生物的生长。
Appl Environ Microbiol. 2013 Jul;79(14):4499-502. doi: 10.1128/AEM.00778-13. Epub 2013 May 10.