检测 SRP 途径在 mRNA 向内质网定位中的功能。

Examining SRP pathway function in mRNA localization to the endoplasmic reticulum.

机构信息

Department of Cell Biology, Duke University School of Medicine, Durham, North Carolina 27710, USA.

Department of Biochemistry, Duke University School of Medicine, Durham, North Carolina 27710, USA.

出版信息

RNA. 2023 Nov;29(11):1703-1724. doi: 10.1261/rna.079643.123. Epub 2023 Aug 29.

Abstract

Signal recognition particle (SRP) pathway function in protein translocation across the endoplasmic reticulum (ER) is well established; its role in RNA localization to the ER remains, however, unclear. In current models, mRNAs undergo translation- and SRP-dependent trafficking to the ER, with ER localization mediated via interactions between SRP-bound translating ribosomes and the ER-resident SRP receptor (SR), a heterodimeric complex comprising SRA, the SRP-binding subunit, and SRB, an integral membrane ER protein. To study SRP pathway function in RNA localization, SR knockout (KO) mammalian cell lines were generated and the consequences of SR KO on steady-state and dynamic mRNA localization examined. CRISPR/Cas9-mediated KO resulted in profound destabilization of SRA. Pairing siRNA silencing of in KO cells yielded viable SR KO cells. Steady-state mRNA compositions and ER-localization patterns in parental and SR KO cells were determined by cell fractionation and deep sequencing. Notably, steady-state cytosol and ER mRNA compositions and partitioning patterns were largely unaltered by loss of SR expression. To examine SRP pathway function in RNA localization dynamics, the subcellular trafficking itineraries of newly exported mRNAs were determined by 4-thiouridine (4SU) pulse-labeling/4SU-seq/cell fractionation. Newly exported mRNAs were distinguished by high ER enrichment, with ER localization being SR-independent. Intriguingly, under conditions of translation initiation inhibition, the ER was the default localization site for all newly exported mRNAs. These data demonstrate that mRNA localization to the ER can be uncoupled from the SRP pathway function and reopen questions regarding the mechanism of RNA localization to the ER.

摘要

信号识别颗粒 (SRP) 途径在蛋白质跨内质网 (ER) 易位中的功能已得到充分证实;然而,其在 RNA 定位于 ER 中的作用仍不清楚。在当前的模型中,mRNA 经历翻译和 SRP 依赖性运输到 ER,通过 SRP 结合的翻译核糖体与 ER 驻留的 SRP 受体(SR)之间的相互作用介导 ER 定位,SR 是一种由 SRA 组成的异二聚体复合物,是 SRP 结合亚基,和 SRB,一种整合膜 ER 蛋白。为了研究 SRP 途径在 RNA 定位中的功能,生成了 SR 敲除(KO)哺乳动物细胞系,并研究了 SR KO 对稳态和动态 mRNA 定位的影响。CRISPR/Cas9 介导的 KO 导致 SRA 严重不稳定。在 KO 细胞中配对 siRNA 沉默导致具有活力的 SR KO 细胞。通过细胞分级分离和深度测序确定亲本和 SR KO 细胞中的稳态 mRNA 组成和 ER 定位模式。值得注意的是,SR 表达缺失对细胞质和 ER 中 mRNA 的组成和分配模式没有太大影响。为了研究 RNA 定位动力学中的 SRP 途径功能,通过 4-硫代尿嘧啶 (4SU) 脉冲标记/4SU-seq/细胞分级分离来确定新输出的 mRNA 的亚细胞运输轨迹。新输出的 mRNA 具有高 ER 富集,并且与 SR 无关。有趣的是,在翻译起始抑制的条件下,ER 是所有新输出 mRNA 的默认定位位点。这些数据表明,mRNA 到 ER 的定位可以与 SRP 途径功能解耦,并重新提出关于 RNA 到 ER 定位的机制的问题。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/204b/10578483/f555a5f61acf/1703f01.jpg

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索