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Finding significance: New perspectives in variant classification of the RAD51 regulators, BRCA2 and beyond.发现意义:RAD51 调节因子 BRCA2 及其他蛋白的变异分类的新视角。
DNA Repair (Amst). 2023 Oct;130:103563. doi: 10.1016/j.dnarep.2023.103563. Epub 2023 Aug 19.
2
Homologous recombination-deficient mutation cluster in tumor suppressor identified by comprehensive analysis of cancer variants.通过对癌症变异的综合分析鉴定出肿瘤抑制因子中同源重组缺陷突变簇。
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Breast cancer-associated missense mutants of the PALB2 WD40 domain, which directly binds RAD51C, RAD51 and BRCA2, disrupt DNA repair.与乳腺癌相关的PALB2 WD40结构域错义突变体直接结合RAD51C、RAD51和BRCA2,会破坏DNA修复。
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Pathogenic germline variants in non-BRCA1/2 homologous recombination genes in ovarian cancer: Analysis of tumor phenotype and survival.卵巢癌中非 BRCA1/2 同源重组基因的致病性种系变异:肿瘤表型和生存分析。
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Homologous recombination and human health: the roles of BRCA1, BRCA2, and associated proteins.同源重组与人类健康:BRCA1、BRCA2及相关蛋白的作用
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RAD52 inactivation is synthetically lethal with deficiencies in BRCA1 and PALB2 in addition to BRCA2 through RAD51-mediated homologous recombination.RAD52 失活与 BRCA1 和 PALB2 缺陷以及 BRCA2 缺陷一样,通过 RAD51 介导的同源重组导致合成致死。
Oncogene. 2013 Jul 25;32(30):3552-8. doi: 10.1038/onc.2012.391. Epub 2012 Sep 10.

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and in precision oncology: Clinical implications for HRD associated breast and ovarian cancers (Review).以及在精准肿瘤学中:与同源重组缺陷(HRD)相关的乳腺癌和卵巢癌的临床意义(综述)
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Checkpoint and recombination pathways independently suppress rates of spontaneous homology-directed chromosomal translocations in budding yeast.检查点和重组途径独立抑制芽殖酵母中自发同源性导向的染色体易位率。
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本文引用的文献

1
Functional and Clinical Characterization of Variants of Uncertain Significance Identifies a Hotspot for Inactivating Missense Variants in RAD51C.功能和临床特征分析不确定意义的变异可鉴定 RAD51C 中失活错义变异的热点。
Cancer Res. 2023 Aug 1;83(15):2557-2571. doi: 10.1158/0008-5472.CAN-22-2319.
2
Functional analyses of rare germline BRCA1 variants by transcriptional activation and homologous recombination repair assays.通过转录激活和同源重组修复测定对罕见种系 BRCA1 变体进行功能分析。
BMC Cancer. 2023 Apr 21;23(1):368. doi: 10.1186/s12885-023-10790-w.
3
Calibration of computational tools for missense variant pathogenicity classification and ClinGen recommendations for PP3/BP4 criteria.计算工具的校准用于错义变异致病性分类和 ClinGen 对 PP3/BP4 标准的建议。
Am J Hum Genet. 2022 Dec 1;109(12):2163-2177. doi: 10.1016/j.ajhg.2022.10.013. Epub 2022 Nov 21.
4
POLθ prevents MRE11-NBS1-CtIP-dependent fork breakage in the absence of BRCA2/RAD51 by filling lagging-strand gaps.POLθ 通过填补滞后链缺口来防止 BRCA2/RAD51 缺失时 MRE11-NBS1-CtIP 依赖性叉断裂。
Mol Cell. 2022 Nov 17;82(22):4218-4231.e8. doi: 10.1016/j.molcel.2022.09.013.
5
Homologous recombination-deficient mutation cluster in tumor suppressor identified by comprehensive analysis of cancer variants.通过对癌症变异的综合分析鉴定出肿瘤抑制因子中同源重组缺陷突变簇。
Proc Natl Acad Sci U S A. 2022 Sep 20;119(38):e2202727119. doi: 10.1073/pnas.2202727119. Epub 2022 Sep 13.
6
BRCA2 BRC missense variants disrupt RAD51-dependent DNA repair.BRCA2 种系错义变异破坏 RAD51 依赖性 DNA 修复。
Elife. 2022 Sep 13;11:e79183. doi: 10.7554/eLife.79183.
7
Homologous Recombination Deficiency in Ovarian, Breast, Colorectal, Pancreatic, Non-Small Cell Lung and Prostate Cancers, and the Mechanisms of Resistance to PARP Inhibitors.卵巢癌、乳腺癌、结直肠癌、胰腺癌、非小细胞肺癌和前列腺癌中的同源重组缺陷以及对PARP抑制剂的耐药机制
Front Oncol. 2022 Jun 17;12:880643. doi: 10.3389/fonc.2022.880643. eCollection 2022.
8
Founder BRCA1 mutations in Nepalese population.尼泊尔人群中BRCA1基因的始祖突变
J Pathol Transl Med. 2022 Jul;56(4):212-216. doi: 10.4132/jptm.2022.05.02. Epub 2022 Jun 15.
9
Discovery of BRCA1/BRCA2 founder variants by haplotype analysis.通过单倍型分析发现 BRCA1/BRCA2 种系变异。
Cancer Genet. 2022 Aug;266-267:19-27. doi: 10.1016/j.cancergen.2022.05.042. Epub 2022 May 28.
10
Functional RECAP (REpair CAPacity) assay identifies homologous recombination deficiency undetected by DNA-based BRCAness tests.功能 RECAP(修复能力)检测可识别基于 DNA 的 BRCA 状态检测无法检出的同源重组缺陷。
Oncogene. 2022 Jun;41(26):3498-3506. doi: 10.1038/s41388-022-02363-1. Epub 2022 Jun 3.

发现意义:RAD51 调节因子 BRCA2 及其他蛋白的变异分类的新视角。

Finding significance: New perspectives in variant classification of the RAD51 regulators, BRCA2 and beyond.

机构信息

University of Pittsburgh, School of Medicine, Department of Pharmacology and Chemical Biology, Pittsburgh, PA, USA.

University of Pennsylvania School of Medicine, Department of Biochemistry and Biophysics, 421 Curie Boulevard, Philadelphia, PA, USA.

出版信息

DNA Repair (Amst). 2023 Oct;130:103563. doi: 10.1016/j.dnarep.2023.103563. Epub 2023 Aug 19.

DOI:10.1016/j.dnarep.2023.103563
PMID:37651978
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10529980/
Abstract

For many individuals harboring a variant of uncertain functional significance (VUS) in a homologous recombination (HR) gene, their risk of developing breast and ovarian cancer is unknown. Integral to the process of HR are BRCA1 and regulators of the central HR protein, RAD51, including BRCA2, PALB2, RAD51C and RAD51D. Due to advancements in sequencing technology and the continued expansion of cancer screening panels, the number of VUS identified in these genes has risen significantly. Standard practices for variant classification utilize different types of predictive, population, phenotypic, allelic and functional evidence. While variant analysis is improving, there remains a struggle to keep up with demand. Understanding the effects of an HR variant can aid in preventative care and is critical for developing an effective cancer treatment plan. In this review, we discuss current perspectives in the classification of variants in the breast and ovarian cancer genes BRCA1, BRCA2, PALB2, RAD51C and RAD51D.

摘要

对于许多携带有同源重组(HR)基因不确定功能意义变异(VUS)的个体,其患乳腺癌和卵巢癌的风险尚不清楚。BRCA1 和 HR 蛋白中央调节剂 RAD51 的调控因子,包括 BRCA2、PALB2、RAD51C 和 RAD51D,是 HR 过程的重要组成部分。由于测序技术的进步和癌症筛查面板的不断扩展,这些基因中 VUS 的数量显著增加。用于变异分类的标准实践利用不同类型的预测、人群、表型、等位和功能证据。虽然变异分析在不断改进,但仍然难以满足需求。了解 HR 变异的影响有助于进行预防保健,对于制定有效的癌症治疗计划至关重要。在这篇综述中,我们讨论了乳腺癌和卵巢癌基因 BRCA1、BRCA2、PALB2、RAD51C 和 RAD51D 中变异分类的当前观点。