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系统生物学方法利用大脑转录组发现帕金森病与精神障碍的共病相互作用。

Systems biology approach discovers comorbidity interaction of Parkinson's disease with psychiatric disorders utilizing brain transcriptome.

作者信息

Nashiry Md Asif, Sumi Shauli Sarmin, Alyami Salem A, Moni Mohammad Ali

机构信息

Data Analytics, Northern Alberta Institute of Technology, Edmonton, AB, Canada.

Computer Science and Engineering, Jashore University of Science and Technology, Jashore, Bangladesh.

出版信息

Front Mol Neurosci. 2023 Aug 16;16:1232805. doi: 10.3389/fnmol.2023.1232805. eCollection 2023.

Abstract

Several studies found that most patients with Parkinson's disorder (PD) appear to have psychiatric symptoms such as depression, anxiety, hallucination, delusion, and cognitive dysfunction. Therefore, recognizing these psychiatrically symptoms of PD patients is crucial for both symptomatic therapy and better knowledge of the pathophysiology of PD. In order to address this issue, we created a bioinformatics framework to determine the effects of PD mRNA expression on understanding its relationship with psychiatric symptoms in PD patients. We have discovered a significant overlap between the sets of differentially expressed genes from PD exposed tissue and psychiatric disordered tissues using RNA-seq datasets. We have chosen Bipolar disorder and Schizophrenia as psychiatric disorders in our study. A number of significant correlations between PD and the occurrence of psychiatric diseases were also found by gene set enrichment analysis, investigations of the protein-protein interaction network, gene regulatory network, and protein-chemical agent interaction network. We anticipate that the results of this pathogenetic study will provide crucial information for understanding the intricate relationship between PD and psychiatric diseases.

摘要

多项研究发现,大多数帕金森病(PD)患者似乎都有精神症状,如抑郁、焦虑、幻觉、妄想和认知功能障碍。因此,识别PD患者的这些精神症状对于对症治疗和更好地了解PD的病理生理学都至关重要。为了解决这个问题,我们创建了一个生物信息学框架,以确定PD mRNA表达对理解其与PD患者精神症状关系的影响。我们使用RNA测序数据集发现,PD暴露组织和精神障碍组织中差异表达基因集之间存在显著重叠。在我们的研究中,我们选择双相情感障碍和精神分裂症作为精神障碍。通过基因集富集分析、蛋白质-蛋白质相互作用网络、基因调控网络和蛋白质-化学试剂相互作用网络的研究,还发现了PD与精神疾病发生之间的一些显著相关性。我们预计,这项发病机制研究的结果将为理解PD与精神疾病之间的复杂关系提供关键信息。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5f86/10466791/2b7112eddfc7/fnmol-16-1232805-g0001.jpg

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