Department of Biology and Ecology, Faculty of Science, University of Ostrava, Chittussiho 10, Ostrava, 710 00, Czech Republic.
Okinawa Institute of Science and Technology, Okinawa, 904-0495, Japan.
Am J Bot. 2023 Nov;110(11):e16238. doi: 10.1002/ajb2.16238. Epub 2023 Oct 24.
Chaetopeltidales is a small, understudied order of the green algal class Chlorophyceae, that is slowly expanding with the occasional discoveries of novel algae. Here we demonstrate that hitherto unrecognized chaetopeltidaleans also exist among previously described but neglected and misclassified species.
Strain SAG 40.91 of Characium acuminatum, shown by previous preliminary evidence to have affinities with the orders Oedogoniales, Chaetophorales, and Chaetopeltidales (together constituting the OCC clade), was investigated with light and electron microscopy to characterize its morphology and ultrastructure. Sequence assemblies of the organellar and nuclear genomes were obtained and utilized in bioinformatic and phylogenetic analyses to address the phylogenetic position of the alga and its salient genomic features.
The characterization of strain SAG 40.91 and a critical literature review led us to reinstate the forgotten genus Hydrocytium A.Braun 1855, with SAG 40.91 representing its type species, Hydrocytium acuminatum. Independent molecular markers converged on placing H. acuminatum as a deeply diverged lineage of the order Chaetopeltidales, formalized as the new family Hydrocytiaceae. Both chloroplast and mitochondrial genomes shared characteristics with other members of Chaetopeltidales and were bloated by repetitive sequences. Notably, the mitochondrial cox2a gene was transferred into the nuclear genome in the H. acuminatum lineage, independently of the same event in Volvocales. The nuclear genome data from H. acuminatum and from another chaetopeltidalean that was reported by others revealed endogenized viral sequences corresponding to novel members of the phylum Nucleocytoviricota.
The resurrected genus Hydrocytium expands the known diversity of chaetopeltidalean algae and provides the first glimpse into their virosphere.
Chaetopeltidales 是绿藻纲 Chlorophyceae 中的一个小而研究不足的目,随着偶尔发现新的藻类,它的范围正在缓慢扩大。在这里,我们证明,以前描述过但被忽视和错误分类的物种中也存在以前未被识别的 Chaetopeltidales。
先前的初步证据表明,Characium acuminatum 菌株 SAG 40.91 与 Oedogoniales、Chaetophorales 和 Chaetopeltidales 目(共同构成 OCC 分支)有亲缘关系,我们用光学和电子显微镜对其形态和超微结构进行了研究。获得了细胞器和核基因组的序列组装,并在生物信息学和系统发育分析中利用这些组装来解决藻类的系统发育位置及其显著的基因组特征。
对 SAG 40.91 菌株的特征描述和批判性文献回顾使我们重新确立了被遗忘的 Hydrocytium A.Braun 1855 属,SAG 40.91 代表其模式种 Hydrocytium acuminatum。独立的分子标记一致表明,H. acuminatum 是 Chaetopeltidales 目的一个深度分化的谱系,形式为新的 Hydrocytiaceae 科。叶绿体和线粒体基因组都具有与 Chaetopeltidales 其他成员相同的特征,并被重复序列膨胀。值得注意的是,线粒体 cox2a 基因在 H. acuminatum 谱系中被转移到核基因组中,与 Volvocales 中的相同事件无关。从 H. acuminatum 和另一个被他人报道的 chaetopeltidalean 获得的核基因组数据揭示了内源性病毒序列,这些序列对应于新的 Nucleocytoviricota 门成员。
复活的 Hydrocytium 属扩大了 Chaetopeltidales 藻类的已知多样性,并首次揭示了它们的病毒圈。