Wang Shan, Tan Shengjun, Chen Fangni, An Yihua
Emergency Station, Dougezhuang Community Health Service Center, Beijing, China.
Key Laboratory of Zoological Systematics and Evolution, Institute of Zoology, Chinese Academy of Sciences, Beijing, China.
Front Neurol. 2023 Aug 17;14:1207795. doi: 10.3389/fneur.2023.1207795. eCollection 2023.
Acute ischemic stroke (AIS) and acute myocardial infarction (AMI) share several features on multiple levels. These two events may occur in conjunction or in rapid succession, and the occurrence of one event may increase the risk of the other. Owing to their similar pathophysiologies, we aimed to identify immune-related biomarkers common to AIS and AMI as potential therapeutic targets.
We identified differentially expressed genes (DEGs) between the AIS and control groups, as well as AMI and control groups using microarray data (GSE16561 and GSE123342). A weighted gene co-expression network analysis (WGCNA) approach was used to identify hub genes associated with AIS and/or AMI progression. The intersection of the four gene sets identified key genes, which were subjected to functional enrichment and protein-protein interaction (PPI) network analyses. We confirmed the expression levels of hub genes using two sets of gene expression profiles (GSE58294 and GSE66360), and the ability of the genes to distinguish patients with AIS and/or AMI from control patients was assessed by calculating the receiver operating characteristic values. Finally, the investigation of transcription factor (TF)-, miRNA-, and drug-gene interactions led to the discovery of therapeutic candidates.
We identified 477 and 440 DEGs between the AIS and control groups and between the AMI and control groups, respectively. Using WGCNA, 2,776 and 2,811 genes in the key modules were identified for AIS and AMI, respectively. Sixty key genes were obtained from the intersection of the four gene sets, which were used to identify the 10 hub genes with the highest connection scores through PPI network analysis. Functional enrichment analysis revealed that the key genes were primarily involved in immunity-related processes. Finally, the upregulation of five hub genes was confirmed using two other datasets, and immune infiltration analysis revealed their correlation with certain immune cells. Regulatory network analyses indicated that and hsa-mir-27a-3p might be important regulators of these genes.
Using comprehensive bioinformatics analyses, we identified five immune-related biomarkers that significantly contributed to the pathophysiological mechanisms of both AIS and AMI. These biomarkers can be used to monitor and prevent AIS after AMI, or vice versa.
急性缺血性卒中(AIS)和急性心肌梗死(AMI)在多个层面具有若干共同特征。这两种事件可能同时发生或相继快速发生,且一种事件的发生可能增加另一种事件的风险。由于它们具有相似的病理生理学,我们旨在识别AIS和AMI共有的免疫相关生物标志物作为潜在治疗靶点。
我们使用微阵列数据(GSE16561和GSE123342)确定AIS与对照组以及AMI与对照组之间的差异表达基因(DEG)。采用加权基因共表达网络分析(WGCNA)方法识别与AIS和/或AMI进展相关的枢纽基因。四个基因集的交集确定了关键基因,对其进行功能富集和蛋白质-蛋白质相互作用(PPI)网络分析。我们使用两组基因表达谱(GSE58294和GSE66360)确认枢纽基因的表达水平,并通过计算受试者工作特征值评估这些基因区分AIS和/或AMI患者与对照患者的能力。最后,对转录因子(TF)-、miRNA-和药物-基因相互作用的研究导致了治疗候选物的发现。
我们分别确定了AIS与对照组以及AMI与对照组之间的477个和440个DEG。使用WGCNA,分别为AIS和AMI在关键模块中鉴定出2776个和2811个基因。从四个基因集的交集中获得了60个关键基因,通过PPI网络分析用于识别连接分数最高的10个枢纽基因。功能富集分析表明关键基因主要参与免疫相关过程。最后,使用另外两个数据集确认了五个枢纽基因的上调,免疫浸润分析揭示了它们与某些免疫细胞的相关性。调控网络分析表明 和hsa-mir-27a-3p可能是这些基因的重要调节因子。
通过全面的生物信息学分析,我们鉴定了五个免疫相关生物标志物,它们对AIS和AMI的病理生理机制均有显著贡献。这些生物标志物可用于监测和预防AMI后的AIS,反之亦然。