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提高催化效率的柔韧性策略。

How Flexibility Can Enhance Catalysis.

机构信息

Center for Interdisciplinary Research in Biology (CIRB), Collège de France, CNRS, INSERM, and Gulliver, CNRS, ESPCI, Université Paris Sciences et Lettres, 75005 Paris, France.

出版信息

Phys Rev Lett. 2023 Aug 25;131(8):088401. doi: 10.1103/PhysRevLett.131.088401.

Abstract

Conformational changes are observed in many enzymes, but their role in catalysis is highly controversial. Here we present a theoretical model that illustrates how rigid catalysts can be fundamentally limited and how a conformational change induced by substrate binding can overcome this limitation, ultimately enabling barrier-free catalysis. The model is deliberately minimal, but the principle it illustrates is general and consistent with unique features of proteins as well as with previous informal proposals to explain the superiority of enzymes over other classes of catalysts. Implementing the discriminative switch suggested by the model could help overcome limitations currently encountered in the design of artificial catalysts.

摘要

在许多酶中都观察到构象变化,但它们在催化中的作用仍存在很大争议。本文提出了一个理论模型,说明了刚性催化剂如何受到根本限制,以及底物结合诱导的构象变化如何克服这种限制,最终实现无势垒催化。该模型故意保持最小化,但它所说明的原理是普遍的,与蛋白质的独特特征以及以前提出的解释酶优于其他催化剂的非正式建议一致。实施该模型所建议的判别开关,可能有助于克服当前在人工催化剂设计中遇到的限制。

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