scNanoCOOL-seq: a long-read single-cell sequencing method for multi-omics profiling within individual cells.
作者信息
Lin Jianli, Xue Xiaohui, Wang Yan, Zhou Yuan, Wu Jian, Xie Haoling, Liu Mengya, Wen Lu, Tang Fuchou
机构信息
Peking-Tsinghua Center for Life Sciences, Academy for Advanced Interdisciplinary Studies, Peking University, Beijing, China.
Biomedical Pioneering Innovation Center, School of Life Sciences, Peking University, Beijing, China.
出版信息
Cell Res. 2023 Nov;33(11):879-882. doi: 10.1038/s41422-023-00873-5. Epub 2023 Sep 12.
Abstract
摘要
相似文献
1
scNanoCOOL-seq: a long-read single-cell sequencing method for multi-omics profiling within individual cells.scNanoCOOL-seq：一种用于单个细胞内多组学分析的长读长单细胞测序方法。
Cell Res. 2023 Nov;33(11):879-882. doi: 10.1038/s41422-023-00873-5. Epub 2023 Sep 12.
2
Current and Future Methods for mRNA Analysis: A Drive Toward Single Molecule Sequencing.mRNA分析的当前及未来方法：迈向单分子测序的动力
Methods Mol Biol. 2018;1783:209-241. doi: 10.1007/978-1-4939-7834-2_11.
3
Normalization for Single-Cell RNA-Seq Data Analysis.单细胞RNA测序数据分析的归一化
Methods Mol Biol. 2019;1935:11-23. doi: 10.1007/978-1-4939-9057-3_2.
4
Advances in long-read single-cell transcriptomics.长读长时程单细胞转录组学的进展。
Hum Genet. 2024 Oct;143(9-10):1005-1020. doi: 10.1007/s00439-024-02678-x. Epub 2024 May 24.
5
Effective detection of variation in single-cell transcriptomes using MATQ-seq.使用 MATQ-seq 有效检测单细胞转录组中的变异。
Nat Methods. 2017 Mar;14(3):267-270. doi: 10.1038/nmeth.4145. Epub 2017 Jan 16.
6
The Evolution of Single-Cell RNA Sequencing Technology and Application: Progress and Perspectives.单细胞 RNA 测序技术的发展与应用：进展与展望。
Int J Mol Sci. 2023 Feb 2;24(3):2943. doi: 10.3390/ijms24032943.
7
SC3: consensus clustering of single-cell RNA-seq data.SC3：单细胞RNA测序数据的一致性聚类
Nat Methods. 2017 May;14(5):483-486. doi: 10.1038/nmeth.4236. Epub 2017 Mar 27.
8
An accessible, interactive GenePattern Notebook for analysis and exploration of single-cell transcriptomic data.一个用于分析和探索单细胞转录组数据的可访问的交互式基因模式笔记本。
F1000Res. 2018 Aug 16;7:1306. doi: 10.12688/f1000research.15830.2. eCollection 2018.
9
Plant Nuclei Isolation for Single-Nucleus RNA Sequencing.植物细胞核分离用于单细胞核 RNA 测序。
Methods Mol Biol. 2023;2686:307-311. doi: 10.1007/978-1-0716-3299-4_15.
10
Transcript Profiling Using Long-Read Sequencing Technologies.使用长读长测序技术进行转录本分析
Methods Mol Biol. 2018;1783:121-147. doi: 10.1007/978-1-4939-7834-2_6.
引用本文的文献
1
Mapping the future: bibliometric analysis of omics research trends in non-small cell lung cancer.绘制未来蓝图：非小细胞肺癌组学研究趋势的文献计量分析
Discov Oncol. 2025 Aug 12;16(1):1536. doi: 10.1007/s12672-025-03140-8.
2
Profiling the epigenome using long-read sequencing.使用长读长测序对表观基因组进行分析。
Nat Genet. 2025 Jan;57(1):27-41. doi: 10.1038/s41588-024-02038-5. Epub 2025 Jan 8.
3
Chromatin accessibility: biological functions, molecular mechanisms and therapeutic application.染色质可及性：生物学功能、分子机制及治疗应用
Signal Transduct Target Ther. 2024 Dec 4;9(1):340. doi: 10.1038/s41392-024-02030-9.
4
Applications of single-cell analysis in immunotherapy for lung cancer: Current progress, new challenges and expectations.单细胞分析在肺癌免疫治疗中的应用：当前进展、新挑战与期望
J Adv Res. 2025 Aug;74:269-281. doi: 10.1016/j.jare.2024.10.008. Epub 2024 Oct 12.
5
scNanoSeq-CUT&Tag: a single-cell long-read CUT&Tag sequencing method for efficient chromatin modification profiling within individual cells.scNanoSeq-CUT&Tag：一种单细胞长读长 CUT&Tag 测序方法，可在单个细胞内高效进行染色质修饰谱分析。
Nat Methods. 2024 Nov;21(11):2044-2057. doi: 10.1038/s41592-024-02453-w. Epub 2024 Oct 7.
6
Applications of single-cell technologies in drug discovery for tumor treatment.单细胞技术在肿瘤治疗药物发现中的应用。
iScience. 2024 Jul 10;27(8):110486. doi: 10.1016/j.isci.2024.110486. eCollection 2024 Aug 16.
本文引用的文献
1
Gene regulation in time and space during X-chromosome inactivation.X 染色体失活过程中的时空调控基因表达。
Nat Rev Mol Cell Biol. 2022 Apr;23(4):231-249. doi: 10.1038/s41580-021-00438-7. Epub 2022 Jan 10.
2
Long-read whole-genome methylation patterning using enzymatic base conversion and nanopore sequencing.使用酶促碱基转换和纳米孔测序进行长读全基因组甲基化模式分析。
Nucleic Acids Res. 2021 Aug 20;49(14):e81. doi: 10.1093/nar/gkab397.
3
Strand-specific single-cell methylomics reveals distinct modes of DNA demethylation dynamics during early mammalian development.链特异性单细胞甲基组学揭示了早期哺乳动物发育过程中 DNA 去甲基化动力学的不同模式。
Nat Commun. 2021 Feb 24;12(1):1286. doi: 10.1038/s41467-021-21532-6.
4
Single-cell multiomics sequencing reveals the functional regulatory landscape of early embryos.单细胞多组学测序揭示了早期胚胎的功能调控景观。
Nat Commun. 2021 Feb 23;12(1):1247. doi: 10.1038/s41467-021-21409-8.
5
Single-cell multiomics: technologies and data analysis methods.单细胞多组学：技术与数据分析方法。
Exp Mol Med. 2020 Sep;52(9):1428-1442. doi: 10.1038/s12276-020-0420-2. Epub 2020 Sep 15.
6
Comprehensive, integrated, and phased whole-genome analysis of the primary ENCODE cell line K562.对 ENCODE 细胞系 K562 的全基因组进行全面、综合和分阶段分析。
Genome Res. 2019 Mar;29(3):472-484. doi: 10.1101/gr.234948.118. Epub 2019 Feb 8.
7
Single-cell multi-omics sequencing of mouse early embryos and embryonic stem cells.小鼠早期胚胎和胚胎干细胞的单细胞多组学测序
Cell Res. 2017 Aug;27(8):967-988. doi: 10.1038/cr.2017.82. Epub 2017 Jun 16.
8
Single-Cell Whole-Genome Amplification and Sequencing: Methodology and Applications.单细胞全基因组扩增与测序：方法与应用
Annu Rev Genomics Hum Genet. 2015;16:79-102. doi: 10.1146/annurev-genom-090413-025352. Epub 2015 Jun 11.
9
Genome-wide detection of single-nucleotide and copy-number variations of a single human cell.单个人类细胞中单核苷酸和拷贝数变异的全基因组检测。
Science. 2012 Dec 21;338(6114):1622-6. doi: 10.1126/science.1229164.
Zotero 插件