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利用铁死亡相关长链非编码RNA建立膀胱癌预后模型。

Establishing a prognostic model with ferroptosis-related long non-coding RNAs in bladder cancer.

作者信息

Li Weisheng, Xiong Yang, Zhu Junlei, Jin Xiaoxiao, Meng Jin, He Wenqiang

机构信息

Henan University of Chinese Medicine, Zhengzhou, China.

Department of Urology, The First Affiliated Hospital of Henan University of Chinese Medicine, Zhengzhou, China.

出版信息

Transl Cancer Res. 2023 Aug 31;12(8):2023-2032. doi: 10.21037/tcr-23-194. Epub 2023 Aug 28.

DOI:10.21037/tcr-23-194
PMID:37701097
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10493782/
Abstract

BACKGROUND

Ferroptosis is a distinct form of cell death that has the potential to supersede the drug resistance that is commonly observed with current chemotherapeutic agents. As a result, ferroptosis presents a new and innovative therapeutic pathway for cancer treatment. The current understanding regarding the expression of genes associated with ferroptosis in bladder cancer (BLCA) and their prognostic implications remains unclear. Consequently, this study aimed to examine the potential prognostic value of ferroptosis-associated long non-coding RNAs (lncRNAs) in BLCA.

METHODS

The Cancer Genome Atlas (TCGA) was accessed to download RNA sequencing data and clinicopathological features of BLCA while accessing the FerrDb database to download ferroptosis-associated genes. The study calculated risk scores for ferroptosis-associated lncRNAs, and subsequently divided patients with BLCA into two groups, namely high- and low-risk, on the basis of the median risk score. Moreover, Kaplan-Meier (K-M) curves, Cox regression analysis, and column plots were utilized for evaluating the risk score prognostic value. Subsequently, the involvement of ferroptosis-associated mRNA, N6-methyladenosine (m6A) mRNA status, and immune responses was investigated for BLCA prognosis.

RESULTS

Thirty-six lncRNAs were identified to be differently expressed and linked to the prognosis of BLCA. The findings from the K-M curve analysis indicated a significant association between a high-risk lncRNA profile and poor BLCA prognosis. The area under curve (AUC) value of the receiver operating characteristic (ROC) curve was 0.810. The risk assessment model exhibited superior performance in predicting prognosis for BLCA compared to conventional clinicopathological features.

CONCLUSIONS

Thirty-six lncRNAs were found to be linked to ferroptosis for the prognosis of patients with BLCA, and these results may provide new insights for treating BLCA.

摘要

背景

铁死亡是一种独特的细胞死亡形式,有可能克服目前化疗药物常见的耐药性。因此,铁死亡为癌症治疗提供了一条新的创新治疗途径。目前对于膀胱癌(BLCA)中与铁死亡相关基因的表达及其预后意义的了解仍不清楚。因此,本研究旨在探讨铁死亡相关长链非编码RNA(lncRNA)在BLCA中的潜在预后价值。

方法

访问癌症基因组图谱(TCGA)以下载BLCA的RNA测序数据和临床病理特征,同时访问FerrDb数据库以下载铁死亡相关基因。该研究计算了铁死亡相关lncRNA的风险评分,随后根据中位风险评分将BLCA患者分为高风险和低风险两组。此外,利用Kaplan-Meier(K-M)曲线、Cox回归分析和柱状图来评估风险评分的预后价值。随后,研究了铁死亡相关mRNA、N6-甲基腺苷(m6A)mRNA状态和免疫反应与BLCA预后的关系。

结果

鉴定出36种lncRNA表达存在差异且与BLCA的预后相关。K-M曲线分析结果表明,高风险lncRNA谱与BLCA预后不良之间存在显著关联。受试者工作特征(ROC)曲线的曲线下面积(AUC)值为0.810。与传统临床病理特征相比,风险评估模型在预测BLCA预后方面表现出更好的性能。

结论

发现36种lncRNA与BLCA患者的铁死亡预后相关,这些结果可能为BLCA的治疗提供新的见解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dffc/10493782/f6d881ae0ab2/tcr-12-08-2023-f5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dffc/10493782/427f7f882fca/tcr-12-08-2023-f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dffc/10493782/5b833944930b/tcr-12-08-2023-f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dffc/10493782/16a2237cacdc/tcr-12-08-2023-f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dffc/10493782/aa4cf686fdcf/tcr-12-08-2023-f4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dffc/10493782/f6d881ae0ab2/tcr-12-08-2023-f5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dffc/10493782/427f7f882fca/tcr-12-08-2023-f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dffc/10493782/5b833944930b/tcr-12-08-2023-f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dffc/10493782/16a2237cacdc/tcr-12-08-2023-f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dffc/10493782/aa4cf686fdcf/tcr-12-08-2023-f4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dffc/10493782/f6d881ae0ab2/tcr-12-08-2023-f5.jpg

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本文引用的文献

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CircRNA circSTIL inhibits ferroptosis in colorectal cancer via miR-431/SLC7A11 axis.环状RNA circSTIL通过miR-431/SLC7A11轴抑制结直肠癌中的铁死亡。
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Ferroptosis: A Novel Type of Cell Death in Male Reproduction.铁死亡:男性生殖中的一种新型细胞死亡方式。
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A Ferroptosis-Related LncRNA Signature Associated with Prognosis, Tumor Immune Environment, and Genome Instability in Hepatocellular Carcinoma.一个与肝细胞癌预后、肿瘤免疫微环境和基因组不稳定性相关的铁死亡相关长非编码 RNA 特征。
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STAT6 inhibits ferroptosis and alleviates acute lung injury via regulating P53/SLC7A11 pathway.STAT6 通过调控 P53/SLC7A11 通路抑制铁死亡从而减轻急性肺损伤。
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HucMSC-derived exosomes delivered BECN1 induces ferroptosis of hepatic stellate cells via regulating the xCT/GPX4 axis.人脐带间充质干细胞来源的外泌体递送 Beclin1 通过调节 xCT/GPX4 轴诱导肝星状细胞发生铁死亡。
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