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选择性清除的历史里程碑。

Landmarks in the history of selective sweeps.

机构信息

Division of Animal Genetics, Indian Veterinary Research Institute, Bareilly, India.

College of Animal Science and Technology, Northwest A&F University, Yangling, Shaanxi, China.

出版信息

Anim Genet. 2023 Dec;54(6):667-688. doi: 10.1111/age.13355. Epub 2023 Sep 14.

Abstract

Half a century ago, a seminal article on the hitchhiking effect by Smith and Haigh inaugurated the concept of the selection signature. Selective sweeps are characterised by the rapid spread of an advantageous genetic variant through a population and hence play an important role in shaping evolution and research on genetic diversity. The process by which a beneficial allele arises and becomes fixed in a population, leading to a increase in the frequency of other linked alleles, is known as genetic hitchhiking or genetic draft. Kimura's neutral theory and hitchhiking theory are complementary, with Kimura's neutral evolution as the 'null model' and positive selection as the 'signal'. Both are widely accepted in evolution, especially with genomics enabling precise measurements. Significant advances in genomic technologies, such as next-generation sequencing, high-density SNP arrays and powerful bioinformatics tools, have made it possible to systematically investigate selection signatures in a variety of species. Although the history of selection signatures is relatively recent, progress has been made in the last two decades, owing to the increasing availability of large-scale genomic data and the development of computational methods. In this review, we embark on a journey through the history of research on selective sweeps, ranging from early theoretical work to recent empirical studies that utilise genomic data.

摘要

半个世纪前,Smith 和 Haigh 发表了一篇关于 hitchhiking effect 的开创性文章,开创了选择信号的概念。选择清除的特点是有利的遗传变异在种群中迅速传播,因此在塑造进化和遗传多样性研究方面发挥着重要作用。有利等位基因在种群中产生并固定下来,导致其他连锁等位基因频率增加的过程,称为遗传 hitchhiking 或遗传拖曳。木村的中性理论和 hitchhiking 理论是互补的,木村的中性进化是“零模型”,而正选择是“信号”。两者在进化中都被广泛接受,尤其是基因组学能够进行精确测量。基因组技术的重大进展,如下一代测序、高密度 SNP 阵列和强大的生物信息学工具,使得在各种物种中系统地研究选择信号成为可能。尽管选择信号的历史相对较新,但由于大规模基因组数据的可用性不断增加和计算方法的发展,在过去二十年中取得了进展。在这篇综述中,我们将追溯选择性清除研究的历史,从早期的理论工作到最近利用基因组数据的实证研究。

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