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对渗透物介导的蛋白质结构域纳米机械展开行为的单分子分析。

Single-molecule analysis of osmolyte-mediated nanomechanical unfolding behavior of a protein domain.

机构信息

Council of Scientific and Industrial Research - Institute of Microbial Technology, Sector-39A, Chandigarh, India.

Council of Scientific and Industrial Research - Institute of Microbial Technology, Sector-39A, Chandigarh, India; Department of Chemistry, College of Science, King Saud University, Riyadh, Saudi Arabia.

出版信息

Int J Biol Macromol. 2023 Dec 31;253(Pt 3):126849. doi: 10.1016/j.ijbiomac.2023.126849. Epub 2023 Sep 16.

Abstract

The small organic molecules, known as osmolytes being ubiquitously present in different cell types, affect protein folding, stability and aggregation. However, it is unknown how the osmolytes affect the nanomechanical unfolding behavior of protein domain. Here, we show the osmolyte-dependent mechanical unfolding properties of protein titin immunoglobulin-27 (I27) domain using an atomic force microscopy (AFM)-based single-molecule force spectroscopy. We found that amines and methylamines improved the mechanical stability of I27 domain, whereas polyols had no effect. Interestingly, glycine betaine (GB) or trimethylamine-N-oxide (TMAO) increased the average unfolding force of the protein domain. The kinetic parameters analyzed at single-molecule level reveal that stabilizing effect of osmolytes is due to a decrease in the unfolding rate constant of I27, which was confirmed by molecular dynamics simulations. Our study reveals different effects that diverse osmolytes have on the mechanical properties of the protein, and suggests the potential use of osmolytes in modulating the mechanical stability of proteins required for various nano-biotechnological applications.

摘要

小分子有机物,即所谓的渗透物,普遍存在于不同的细胞类型中,它们影响蛋白质的折叠、稳定性和聚集。然而,渗透物如何影响蛋白质结构域的纳米机械展开行为尚不清楚。在这里,我们使用基于原子力显微镜(AFM)的单分子力谱技术展示了蛋白titin 免疫球蛋白-27(I27)结构域的渗透物依赖性机械展开特性。我们发现,胺类和甲基胺类提高了 I27 结构域的机械稳定性,而多元醇则没有影响。有趣的是,甘氨酸甜菜碱(GB)或三甲胺 N-氧化物(TMAO)增加了蛋白质结构域的平均展开力。在单分子水平上分析的动力学参数表明,渗透物的稳定作用是由于 I27 的展开速率常数降低所致,这通过分子动力学模拟得到了证实。我们的研究揭示了不同的渗透物对蛋白质机械性能的不同影响,并表明渗透物在调节各种纳米生物技术应用所需的蛋白质机械稳定性方面具有潜在的应用价值。

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