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评估 ForenSeq mtDNA 全基因组试剂盒在法医学中的应用。

Assessment of ForenSeq mtDNA Whole Genome Kit for forensic application.

机构信息

Department of Forensic Genetics, West China School of Basic Medical Sciences and Forensic Medicine, Sichuan University, Chengdu, Sichuan, China.

Criminal Investigation Bureau, Chengdu Public Security Bureau, Criminal Science and Technology Division, Chengdu, 610000, Sichuan, China.

出版信息

Int J Legal Med. 2023 Nov;137(6):1693-1703. doi: 10.1007/s00414-023-03084-0. Epub 2023 Sep 20.

Abstract

Mitochondrial DNA (mtDNA) is an indispensable genetic marker in forensic genetics. The emergence and development of massively parallel sequencing (MPS) makes it possible to obtain complete mitochondrial genome sequences more quickly and accurately. The study evaluated the advantages and limitations of the ForenSeq mtDNA Whole Genome Kit in the practical application of forensic genetics by detecting human genomic DNA standards and thirty-three case samples. We used control DNA with different amount to determine sensitivity of the assay. Even when the input DNA is as low as 2.5 pg, most of the mitochondrial genome sequences could still be covered. For the detection of buccal swabs and aged case samples (bloodstains, bones, teeth), most samples could achieve complete coverage of mitochondrial genome. However, when ancient samples and hair samples without hair follicles were sequenced by the kit, it failed to obtain sequence information. In general, the ForenSeq mtDNA Whole Genome Kit has certain applicability to forensic low template and degradation samples, and these results provide the data basis for subsequent forensic applications of the assay. The overall detection process and subsequent analysis are easy to standardize, and it has certain application potential in forensic cases.

摘要

线粒体 DNA(mtDNA)是法医学遗传学中不可或缺的遗传标记。大规模平行测序(MPS)的出现和发展使得更快速、更准确地获得完整的线粒体基因组序列成为可能。本研究通过检测人类基因组 DNA 标准品和三十三个案例样本,评估了 ForenSeq mtDNA 全基因组试剂盒在法医学遗传学实际应用中的优势和局限性。我们使用不同量的对照 DNA 来确定检测的灵敏度。即使输入 DNA 低至 2.5pg,大多数线粒体基因组序列仍能被覆盖。对于口腔拭子和陈旧案例样本(血斑、骨骼、牙齿)的检测,大多数样本能够实现线粒体基因组的完全覆盖。然而,当用试剂盒对古代样本和无毛囊的毛发样本进行测序时,无法获得序列信息。总的来说,ForenSeq mtDNA 全基因组试剂盒对法医低模板和降解样本具有一定的适用性,这些结果为后续的法医应用提供了数据基础。整个检测过程和后续分析易于标准化,在法医学案例中具有一定的应用潜力。

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