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scRNA-seq 揭示了花生(Arachis hypogaea)中突变抑制叶片生长的机制。

scRNA-seq Reveals the Mechanism of Mutation to Repress Leaf Growth in Peanut ( L.).

机构信息

Guangdong Provincial Key Laboratory of Crop Genetic Improvement, South China Peanut Sub-Center of National Center of Oilseed Crops Improvement, Crops Research Institute, Guangdong Academy of Agricultural Sciences (GDAAS), Guangzhou 510640, China.

College of Agriculture, South China Agriculture University, Guangzhou 510642, China.

出版信息

Cells. 2023 Sep 19;12(18):2305. doi: 10.3390/cells12182305.

DOI:10.3390/cells12182305
PMID:37759528
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10527976/
Abstract

() controls the conversion of oleic acids into linoleic acids. Mutations in not only increase the high-oleic content, but also repress the leaf growth. However, the mechanism by which regulates the growth pathway has not been elucidated in peanut leaves with single-cell resolution. In this study, we isolated mutant leaf protoplast cells to perform single-cell RNA sequencing. Approximately 24,988 individual cells with 10,249 expressed genes were classified into five major cell types. A comparative analysis of 3495 differentially expressed genes (DEGs) in distinct cell types demonstrated that inhibited the expression of the cytokinin synthesis gene in vascular cells, thereby repressing leaf growth. Further, pseudo-time trajectory analysis indicated that repressed leaf cell differentiation, and cell-cycle evidence displayed that perturbed the normal cell cycle to induce the majority of cells to drop into the S phase. Additionally, important transcription factors were filtered from the DEG profiles that connected the network involved in high-oleic acid accumulation (), activated the hormone pathway (, ), and potentially regulated leaf growth (, , ). Collectively, our study describes different gene atlases in high-oleic and normal peanut seedling leaves, providing novel biological insights to elucidate the molecular mechanism of the high-oleic peanut-associated agronomic trait at the single-cell level.

摘要

()控制油酸向亚油酸的转化。突变不仅增加了高油酸的含量,还抑制了叶片生长。然而,在具有单细胞分辨率的花生叶片中,尚未阐明调控生长途径的机制。在这项研究中,我们分离了突变体叶片原生质体细胞,以进行单细胞 RNA 测序。大约 24988 个具有 10249 个表达基因的单个细胞被分为五个主要细胞类型。对不同细胞类型的 3495 个差异表达基因(DEG)的比较分析表明,在血管细胞中抑制细胞分裂素合成基因的表达,从而抑制叶片生长。此外,拟时轨迹分析表明,突变体抑制了叶片细胞分化,细胞周期证据显示,突变体扰乱了正常的细胞周期,导致大多数细胞进入 S 期。此外,从 DEG 图谱中筛选出的重要转录因子连接了涉及高油酸积累的网络(),激活了激素途径(、),并可能调节叶片生长(、、)。总之,我们的研究描述了高油酸和正常花生幼苗叶片中的不同基因图谱,为阐明高油酸花生相关农艺性状的分子机制提供了新的生物学见解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e27c/10527976/b79a1f6cbe1c/cells-12-02305-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e27c/10527976/cf971e85a2d0/cells-12-02305-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e27c/10527976/1d8869a2722d/cells-12-02305-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e27c/10527976/1976995ccaf4/cells-12-02305-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e27c/10527976/2a806032333f/cells-12-02305-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e27c/10527976/7eba47dbd46f/cells-12-02305-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e27c/10527976/7b4d0a124df8/cells-12-02305-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e27c/10527976/b79a1f6cbe1c/cells-12-02305-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e27c/10527976/cf971e85a2d0/cells-12-02305-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e27c/10527976/1d8869a2722d/cells-12-02305-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e27c/10527976/1976995ccaf4/cells-12-02305-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e27c/10527976/2a806032333f/cells-12-02305-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e27c/10527976/7eba47dbd46f/cells-12-02305-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e27c/10527976/7b4d0a124df8/cells-12-02305-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e27c/10527976/b79a1f6cbe1c/cells-12-02305-g007.jpg

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