Kushol Rafsanjany, Wilman Alan H, Kalra Sanjay, Yang Yee-Hong
Department of Computing Science, University of Alberta, Edmonton, AB T6G 2R3, Canada.
Departments of Radiology and Diagnostic Imaging and Biomedical Engineering, University of Alberta, Edmonton, AB T6G 2R3, Canada.
Diagnostics (Basel). 2023 Sep 14;13(18):2947. doi: 10.3390/diagnostics13182947.
In medical research and clinical applications, the utilization of MRI datasets from multiple centers has become increasingly prevalent. However, inherent variability between these centers presents challenges due to domain shift, which can impact the quality and reliability of the analysis. Regrettably, the absence of adequate tools for domain shift analysis hinders the development and validation of domain adaptation and harmonization techniques. To address this issue, this paper presents a novel (DSMRI) framework designed explicitly for domain shift analysis in multi-center MRI datasets. The proposed model assesses the degree of domain shift within an MRI dataset by leveraging various MRI-quality-related metrics derived from the spatial domain. DSMRI also incorporates features from the frequency domain to capture low- and high-frequency information about the image. It further includes the wavelet domain features by effectively measuring the sparsity and energy present in the wavelet coefficients. Furthermore, DSMRI introduces several texture features, thereby enhancing the robustness of the domain shift analysis process. The proposed framework includes visualization techniques such as t-SNE and UMAP to demonstrate that similar data are grouped closely while dissimilar data are in separate clusters. Additionally, quantitative analysis is used to measure the domain shift distance, domain classification accuracy, and the ranking of significant features. The effectiveness of the proposed approach is demonstrated using experimental evaluations on seven large-scale multi-site neuroimaging datasets.
在医学研究和临床应用中,多中心MRI数据集的使用越来越普遍。然而,由于领域偏移,这些中心之间的固有变异性带来了挑战,这可能会影响分析的质量和可靠性。遗憾的是,缺乏用于领域偏移分析的适当工具阻碍了领域适应和协调技术的开发与验证。为了解决这个问题,本文提出了一种专门为多中心MRI数据集中的领域偏移分析设计的新颖(DSMRI)框架。所提出的模型通过利用从空间域导出的各种与MRI质量相关的指标来评估MRI数据集中的领域偏移程度。DSMRI还结合了频域特征以捕获图像的低频和高频信息。它通过有效测量小波系数中存在的稀疏性和能量进一步纳入小波域特征。此外,DSMRI引入了几个纹理特征,从而增强了领域偏移分析过程的鲁棒性。所提出的框架包括t-SNE和UMAP等可视化技术,以证明相似的数据紧密分组,而异样的数据则在单独的簇中。此外,定量分析用于测量领域偏移距离、领域分类准确性和重要特征的排名。使用对七个大规模多站点神经影像数据集的实验评估证明了所提出方法的有效性。