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用于胰腺导管腺癌的自动化预后模型。

An Automated Prognostic Model for Pancreatic Ductal Adenocarcinoma.

机构信息

Biomedical Engineering Laboratory, School of Electrical & Computer Engineering, National Technical University of Athens, 9 Iroon Polytechniou St., 15780 Athens, Greece.

2nd Department of Surgery, Aretaieion Hospital, School of Medicine, National and Kapodistrian University of Athens, 76 Vas. Sophias Ave., 11528 Athens, Greece.

出版信息

Genes (Basel). 2023 Aug 31;14(9):1742. doi: 10.3390/genes14091742.

DOI:10.3390/genes14091742
PMID:37761882
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10530933/
Abstract

Pancreatic ductal adenocarcinoma (PDAC) constitutes a leading cause of cancer-related mortality despite advances in detection and treatment methods. While computed tomography (CT) serves as the current gold standard for initial evaluation of PDAC, its prognostic value remains limited, as it relies on diagnostic stage parameters encompassing tumor size, lymph node involvement, and metastasis. Radiomics have recently shown promise in predicting postoperative survival of PDAC patients; however, they rely on manual pancreas and tumor delineation by clinicians. In this study, we collected a dataset of pre-operative CT scans from a cohort of 40 PDAC patients to evaluate a fully automated pipeline for survival prediction. Employing nnU-Net trained on an external dataset, we generated automated pancreas and tumor segmentations. Subsequently, we extracted 854 radiomic features from each segmentation, which we narrowed down to 29 via feature selection. We then combined these features with the Tumor, Node, Metastasis (TNM) system staging parameters, as well as the patient's age. We trained a random survival forest model to perform an overall survival prediction over time, as well as a random forest classifier for the binary classification of two-year survival, using repeated cross-validation for evaluation. Our results exhibited promise, with a mean C-index of 0.731 for survival modeling and a mean accuracy of 0.76 in two-year survival prediction, providing evidence of the feasibility and potential efficacy of a fully automated pipeline for PDAC prognostication. By eliminating the labor-intensive manual segmentation process, our streamlined pipeline demonstrates an efficient and accurate prognostication process, laying the foundation for future research endeavors.

摘要

胰腺导管腺癌 (PDAC) 尽管在检测和治疗方法上取得了进展,但仍是癌症相关死亡的主要原因。虽然计算机断层扫描 (CT) 是 PDAC 初始评估的当前金标准,但由于其预后价值仍受到诊断分期参数的限制,这些参数包括肿瘤大小、淋巴结受累和转移。放射组学最近在预测 PDAC 患者术后生存方面显示出了潜力;然而,它们依赖于临床医生对胰腺和肿瘤的手动描绘。在这项研究中,我们从一组 40 名 PDAC 患者的术前 CT 扫描中收集了一个数据集,以评估用于生存预测的完全自动化流水线。我们使用在外部数据集上训练的 nnU-Net 生成自动胰腺和肿瘤分割。随后,我们从每个分割中提取了 854 个放射组学特征,通过特征选择将其缩小到 29 个。然后,我们将这些特征与肿瘤、淋巴结、转移 (TNM) 系统分期参数以及患者年龄相结合。我们使用重复交叉验证进行评估,训练了一个随机生存森林模型来进行随时间的总体生存预测,以及一个随机森林分类器来进行两年生存的二分类。我们的结果显示出了一定的前景,生存建模的平均 C 指数为 0.731,两年生存预测的平均准确率为 0.76,证明了完全自动化 PDAC 预后预测流水线的可行性和潜在疗效。通过消除劳动密集型的手动分割过程,我们的简化流水线展示了一种高效准确的预后过程,为未来的研究努力奠定了基础。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6596/10530933/31fc195811d9/genes-14-01742-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6596/10530933/1407ca1530a6/genes-14-01742-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6596/10530933/0ba2170efbb1/genes-14-01742-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6596/10530933/d76655d974db/genes-14-01742-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6596/10530933/31fc195811d9/genes-14-01742-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6596/10530933/1407ca1530a6/genes-14-01742-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6596/10530933/0ba2170efbb1/genes-14-01742-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6596/10530933/d76655d974db/genes-14-01742-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6596/10530933/31fc195811d9/genes-14-01742-g004.jpg

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