轻度脱水对小鼠肾脏单细胞转录组和染色质可及性的影响。
Mild dehydration effects on the murine kidney single-nucleus transcriptome and chromatin accessibility.
机构信息
Section of Cardio-Renal Physiology and Medicine, Division of Nephrology, Department of Medicine, University of Alabama at Birmingham, Birmingham, Alabama, United States.
出版信息
Am J Physiol Renal Physiol. 2023 Dec 1;325(6):F717-F732. doi: 10.1152/ajprenal.00161.2023. Epub 2023 Sep 28.
Daily, we may experience mild dehydration with a rise in plasma osmolality that triggers the release of vasopressin. Although the effect of dehydration is well characterized in collecting duct principal cells (CDPCs), we hypothesized that mild dehydration (<12 h) results in many kidney cell-specific changes in transcriptomes and chromatin accessibility. Single-nucleus (sn) multiome (RNA-assay for transposase-accessible chromatin) sequencing and bulk RNA sequencing of kidneys from male and female mice that were mildly water deprived or not were compared. Water-deprived mice had a significant increase in plasma osmolality. sn-multiome-seq resulted in 19,837 nuclei that were annotated into 33 clusters. In CDPCs, aquaporin 2 () and aquaporin 3 () were greater in dehydrated mice, but there were novel genes like gremlin 2 (; a cytokine) that were increased compared with ad libitum mice. The transcription factor cAMP-responsive element modulator () was greater in CDPCs of dehydrated mice, and the DNA motif was more accessible. There were hundreds of sex- and dehydration-specific differentially expressed genes (DEGs) throughout the kidney, especially in the proximal tubules and thin limbs. In male mice, DEGs were enriched in pathways related to lipid metabolism, whereas female DEGs were enriched in organic acid metabolism. Many highly expressed genes had a positive correlation with increased chromatin accessibility, and mild dehydration exerted many transcriptional changes that we detected at the chromatin level. Even with a rise in plasma osmolality, male and female kidneys have distinct transcriptomes suggesting that there may be diverse mechanisms used to remain in fluid balance. The kidney consists of >30 cell types that work collectively to maintain fluid-electrolyte balance. Kidney single-nucleus transcriptomes and chromatin accessibility profiles from male and female control (ad libitum water and food) or mildly dehydrated mice (ad libitum food, water deprivation) were determined. Mild dehydration caused hundreds of cell- and sex-specific transcriptomic changes, even though the kidney function to conserve water was the same.
我们每天可能会经历轻度脱水,血浆渗透压升高会触发血管加压素的释放。虽然脱水对集合管主细胞 (CDPC) 的影响已经得到很好的描述,但我们假设轻度脱水(<12 小时)会导致肾脏细胞的许多特定转录组和染色质可及性变化。对轻度水剥夺或未水剥夺的雄性和雌性小鼠肾脏的单细胞(sn)多组学(转座酶可及染色质的 RNA 分析)测序和批量 RNA 测序进行了比较。水剥夺小鼠的血浆渗透压显著升高。sn-多组学-seq 产生了 19837 个核,这些核被注释为 33 个簇。在 CDPCs 中,脱水小鼠的水通道蛋白 2 (AQP2) 和水通道蛋白 3 (AQP3) 增加,但与自由进食的小鼠相比,新型基因如骨形态发生蛋白抑制剂 2 (Gremlin 2; 一种细胞因子) 增加。脱水小鼠 CDPCs 中的 cAMP 反应元件调节剂 () 增加,DNA 基序更易接近。整个肾脏中存在数百个性别和脱水特异性差异表达基因 (DEG),尤其是在近端肾小管和薄段。在雄性小鼠中,DEG 富集在与脂质代谢相关的途径中,而雌性 DEG 则富集在有机酸代谢中。许多高表达基因与染色质可及性的增加呈正相关,轻度脱水在染色质水平上引起了许多转录变化。即使血浆渗透压升高,雄性和雌性肾脏也具有独特的转录组,表明可能存在用于保持液体平衡的不同机制。肾脏由>30 种细胞类型组成,这些细胞共同作用以维持液体-电解质平衡。确定了雄性和雌性对照(自由饮水和食物)或轻度脱水(自由食物,水剥夺)小鼠的肾脏单细胞转录组和染色质可及性图谱。即使肾脏保持水分的功能相同,轻度脱水也会引起数百种细胞和性别特异性转录组变化。