Epithelial Systems Biology Laboratory, National Heart, Lung, and Blood Institute, National Institutes of Health, Bethesda, Maryland 20814, USA; email:
Division of Nephrology, Department of Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland 21287, USA.
Annu Rev Pharmacol Toxicol. 2022 Jan 6;62:595-616. doi: 10.1146/annurev-pharmtox-052120-011012. Epub 2021 Sep 27.
Systems biology can be defined as the study of a biological process in which all of the relevant components are investigated together in parallel to discover the mechanism. Although the approach is not new, it has come to the forefront as a result of genome sequencing projects completed in the first few years of the current century. It has elements of large-scale data acquisition (chiefly next-generation sequencing-based methods and protein mass spectrometry) and large-scale data analysis (big data integration and Bayesian modeling). Here we discuss these methodologies and show how they can be applied to understand the downstream effects of GPCR signaling, specifically looking at how the neurohypophyseal peptide hormone vasopressin, working through the V2 receptor and PKA activation, regulates the water channel aquaporin-2. The emerging picture provides a detailedframework for understanding the molecular mechanisms involved in water balance disorders, pointing the way to improved treatment of both polyuric disorders and water-retention disorders causing dilutional hyponatremia.
系统生物学可以定义为研究生物过程的一种方法,其中所有相关的组成部分都被同时平行地研究,以发现其机制。尽管这种方法并不新鲜,但由于本世纪头几年完成的基因组测序项目,它已成为研究的前沿领域。它包含了大规模数据采集(主要基于下一代测序的方法和蛋白质质谱法)和大规模数据分析(大数据集成和贝叶斯建模)。在这里,我们讨论这些方法,并展示如何将它们应用于理解 GPCR 信号的下游效应,特别是研究神经垂体肽激素加压素如何通过 V2 受体和 PKA 激活来调节水通道 aquaporin-2。这一新兴的图景为理解水平衡紊乱所涉及的分子机制提供了一个详细的框架,为改善多尿症和引起稀释性低钠血症的水潴留症的治疗指明了方向。