Instituto de Investigación en Biomedicina de Buenos Aires (IBioBA) - CONICET - Partner Institute of the Max Planck Society, Buenos Aires C1425FQD, Argentina.
Biochem J. 2023 Oct 11;480(19):1503-1532. doi: 10.1042/BCJ20220396.
The protein kinase PDK1 phosphorylates at least 24 distinct substrates, all of which belong to the AGC protein kinase group. Some substrates, such as conventional PKCs, undergo phosphorylation by PDK1 during their synthesis and subsequently get activated by DAG and Calcium. On the other hand, other substrates, including members of the Akt/PKB, S6K, SGK, and RSK families, undergo phosphorylation and activation downstream of PI3-kinase signaling. This review presents two accepted molecular mechanisms that determine the precise and timely phosphorylation of different substrates by PDK1. The first mechanism involves the colocalization of PDK1 with Akt/PKB in the presence of PIP3. The second mechanism involves the regulated docking interaction between the hydrophobic motif (HM) of substrates and the PIF-pocket of PDK1. This interaction, in trans, is equivalent to the molecular mechanism that governs the activity of AGC kinases through their HMs intramolecularly. PDK1 has been instrumental in illustrating the bi-directional allosteric communication between the PIF-pocket and the ATP-binding site and the potential of the system for drug discovery. PDK1's interaction with substrates is not solely regulated by the substrates themselves. Recent research indicates that full-length PDK1 can adopt various conformations based on the positioning of the PH domain relative to the catalytic domain. These distinct conformations of full-length PDK1 can influence the interaction and phosphorylation of substrates. Finally, we critically discuss recent findings proposing that PIP3 can directly regulate the activity of PDK1, which contradicts extensive in vitro and in vivo studies conducted over the years.
蛋白激酶 PDK1 磷酸化至少 24 种不同的底物,这些底物都属于 AGC 蛋白激酶家族。有些底物,如传统的蛋白激酶 C,在合成过程中会被 PDK1 磷酸化,随后被 DAG 和钙激活。另一方面,其他底物,包括 Akt/PKB、S6K、SGK 和 RSK 家族的成员,在 PI3-激酶信号下游经历磷酸化和激活。这篇综述介绍了两种公认的分子机制,它们决定了 PDK1 对不同底物的精确和及时磷酸化。第一种机制涉及到 PDK1 在存在 PIP3 的情况下与 Akt/PKB 的共定位。第二种机制涉及到底物的疏水性基序(HM)和 PDK1 的 PIF 口袋之间的受调控的对接相互作用。这种相互作用,在转位上,相当于通过它们的 HM 分子内控制 AGC 激酶活性的分子机制。PDK1 在说明 PIF 口袋和 ATP 结合位点之间的双向变构通讯以及该系统用于药物发现的潜力方面发挥了重要作用。PDK1 与底物的相互作用不仅受底物自身的调节。最近的研究表明,全长 PDK1 可以根据 PH 结构域相对于催化结构域的位置采用各种构象。这些全长 PDK1 的不同构象可以影响底物的相互作用和磷酸化。最后,我们批判性地讨论了最近的发现,这些发现表明 PIP3 可以直接调节 PDK1 的活性,这与多年来进行的广泛的体外和体内研究相矛盾。