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间苯二酚[4]芳烃与仲胺的配合物:合成、溶剂对结构的影响以及非共价相互作用的理论计算

Complexes of resorcin[4]arene with secondary amines: synthesis, solvent influence on structure, and theoretical calculations of non-covalent interactions.

作者信息

Iwanek Waldemar

机构信息

Bydgoszcz University of Science and Technology, Faculty of Chemical Technology and Engineering, Seminaryjna 3, 85-326 Bydgoszcz, Poland.

出版信息

Beilstein J Org Chem. 2023 Sep 29;19:1525-1536. doi: 10.3762/bjoc.19.109. eCollection 2023.

DOI:10.3762/bjoc.19.109
PMID:37799176
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10548251/
Abstract

Resorcin[4]arenes (R[4]A) are macrocyclic compounds with a cavity structure. Despite a relatively small cavity, these compounds are capable of forming complexes with small organic molecules. The current paper focuses on the synthesis of complexes between R[4]A and secondary aliphatic amines (sec-amines). Through NMR spectroscopy, it was observed that "" complexes are formed depending on the solvent. It was also found that the stoichiometry of the formed complexes depends on the size of the amine molecule. The automated interaction sites screening (aISS) made it possible to generate molecular ensembles of complexes. The geometry of the ensembles was first optimized with the r2scan-3c functional and, finally, the structure with the lowest energy, with the functional PBE0-D4/mTZVPP/CPCM. The Hartree-Fock plus London dispersion (HFLD) method was used for the study of non-covalent interactions (NCI). The calculations lead to the conclusion that a reduction in electrostatic interactions and an increase in exchange and dispersion interactions in CHCl in relation to DMSO are the driving forces behind the placement of sec-amine molecules into the R[4]A cavity and the formation of "" type complexes.

摘要

间苯二酚[4]芳烃(R[4]A)是具有空腔结构的大环化合物。尽管其空腔相对较小,但这些化合物能够与小有机分子形成配合物。本文重点研究R[4]A与仲脂肪胺(仲胺)之间配合物的合成。通过核磁共振光谱观察到,根据溶剂不同会形成不同的配合物。还发现所形成配合物的化学计量比取决于胺分子的大小。自动相互作用位点筛选(aISS)使得生成配合物的分子集合成为可能。首先使用r2scan - 3c泛函对集合体的几何结构进行优化,最后使用PBE0 - D4/mTZVPP/CPCM泛函得到能量最低的结构。采用哈特里 - 福克加伦敦色散(HFLD)方法研究非共价相互作用(NCI)。计算得出结论,与二甲基亚砜相比,氯仿中静电相互作用的降低以及交换和色散相互作用的增加是仲胺分子进入R[4]A空腔并形成特定类型配合物的驱动力。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b206/10548251/331250c78a9b/Beilstein_J_Org_Chem-19-1525-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b206/10548251/62c058393b8a/Beilstein_J_Org_Chem-19-1525-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b206/10548251/4eb20924cd18/Beilstein_J_Org_Chem-19-1525-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b206/10548251/8c50da21acaa/Beilstein_J_Org_Chem-19-1525-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b206/10548251/3e271ac76d0e/Beilstein_J_Org_Chem-19-1525-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b206/10548251/03c241f10970/Beilstein_J_Org_Chem-19-1525-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b206/10548251/b774bf00209a/Beilstein_J_Org_Chem-19-1525-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b206/10548251/331250c78a9b/Beilstein_J_Org_Chem-19-1525-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b206/10548251/62c058393b8a/Beilstein_J_Org_Chem-19-1525-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b206/10548251/4eb20924cd18/Beilstein_J_Org_Chem-19-1525-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b206/10548251/8c50da21acaa/Beilstein_J_Org_Chem-19-1525-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b206/10548251/3e271ac76d0e/Beilstein_J_Org_Chem-19-1525-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b206/10548251/03c241f10970/Beilstein_J_Org_Chem-19-1525-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b206/10548251/b774bf00209a/Beilstein_J_Org_Chem-19-1525-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b206/10548251/331250c78a9b/Beilstein_J_Org_Chem-19-1525-g006.jpg

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