Chatzimagas Leonie, Hub Jochen S
Theoretical Physics and Center for Biophysics, Saarland University, Saarbrücken 66123, Germany.
Phys Rev Lett. 2023 Sep 29;131(13):134003. doi: 10.1103/PhysRevLett.131.134003.
X-ray free-electron lasers (XFELs) produce x-ray pulses with high brilliance and short pulse duration. These properties enable structural investigations of biomolecular nanocrystals, and they allow one to resolve the dynamics of biomolecules down to the femtosecond timescale. Liquid jets are widely used to deliver samples into the XFEL beam. The impact of the x-ray pulse leads to vaporization and explosion of the liquid jet, while the expanding gas triggers the formation of shock wave trains traveling along the jet, which may affect biomolecular samples before they have been probed. Here, we used molecular dynamics simulations to reveal the structural dynamics of shock waves after an x-ray impact. Analysis of the density and temperature in the jet revealed shock waves that form close to the explosion center, travel along the jet with supersonic velocities, and decay exponentially with an attenuation length proportional to the jet diameter. A trailing shock wave formed after the first shock wave, similar to the shock wave trains in experiments. High shock wave velocities in our simulations are compatible with the phenomenon of "fast sound," as emerging at large sound frequencies. Although using purely classical models in the simulations, the resulting explosion geometry and shock wave dynamics closely resemble experimental findings, and they highlight the importance of atomistic details for modeling shock wave attenuation.
X射线自由电子激光器(XFELs)产生具有高亮度和短脉冲持续时间的X射线脉冲。这些特性使得对生物分子纳米晶体进行结构研究成为可能,并且能够让人们解析生物分子在飞秒时间尺度下的动力学。液体射流被广泛用于将样品输送到XFEL光束中。X射线脉冲的冲击会导致液体射流汽化和爆炸,而膨胀的气体引发沿着射流传播的一系列冲击波的形成,这可能在生物分子样品被探测之前就对其产生影响。在这里,我们使用分子动力学模拟来揭示X射线冲击后冲击波的结构动力学。对射流中的密度和温度分析揭示了在靠近爆炸中心形成、以超音速沿着射流传播并且以与射流直径成比例的衰减长度呈指数衰减的冲击波。在第一个冲击波之后形成了一个尾随冲击波,类似于实验中的冲击波序列。我们模拟中的高冲击波速度与在高声频下出现的“快声”现象相符。尽管在模拟中使用的是纯经典模型,但所得到的爆炸几何形状和冲击波动力学与实验结果非常相似,并且突出了原子细节对于模拟冲击波衰减的重要性。