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STIL 卷曲螺旋结构域寡聚化的分子机制。

Molecular Mechanism of STIL Coiled-Coil Domain Oligomerization.

机构信息

Institute of Chemistry, The Hebrew University of Jerusalem, Safra Campus Givat Ram, Jerusalem 91904, Israel.

School of Chemistry, University of Bristol, Cantock's Close, Bristol BS8 1TS, UK.

出版信息

Int J Mol Sci. 2023 Sep 27;24(19):14616. doi: 10.3390/ijms241914616.

DOI:10.3390/ijms241914616
PMID:37834064
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10572602/
Abstract

Coiled-coil domains (CCDs) play key roles in regulating both healthy cellular processes and the pathogenesis of various diseases by controlling protein self-association and protein-protein interactions. Here, we probe the mechanism of oligomerization of a peptide representing the CCD of the STIL protein, a tetrameric multi-domain protein that is over-expressed in several cancers and associated with metastatic spread. STIL tetramerization is mediated both by an intrinsically disordered domain (STIL) and a structured CCD (STIL CCD). Disrupting STIL oligomerization via the CCD inhibits its activity We describe a comprehensive biophysical and structural characterization of the concentration-dependent oligomerization of STIL CCD peptide. We combine analytical ultracentrifugation, fluorescence and circular dichroism spectroscopy to probe the STIL CCD peptide assembly in solution and determine dissociation constants of both the dimerization, (K = 8 ± 2 µM) and tetramerization (K = 68 ± 2 µM) of the WT STIL CCD peptide. The higher-order oligomers result in increased thermal stability and cooperativity of association. We suggest that this complex oligomerization mechanism regulates the activated levels of STIL in the cell and during centriole duplication. In addition, we present X-ray crystal structures for the CCD containing destabilising (L736E) and stabilising (Q729L) mutations, which reveal dimeric and tetrameric antiparallel coiled-coil structures, respectively. Overall, this study offers a basis for understanding the structural molecular biology of the STIL protein, and how it might be targeted to discover anti-cancer reagents.

摘要

卷曲螺旋结构域 (CCDs) 通过控制蛋白质的自我组装和蛋白质-蛋白质相互作用,在调节健康细胞过程和各种疾病的发病机制方面发挥着关键作用。在这里,我们研究了代表 STIL 蛋白 CCD 的肽的寡聚化机制,STIL 是一种在多种癌症中过度表达的四聚体多功能蛋白,与转移扩散有关。STIL 四聚化既由无规卷曲结构域 (STIL) 介导,也由结构域 (STIL CCD) 介导。通过 CCD 破坏 STIL 寡聚化会抑制其活性。我们描述了对 STIL CCD 肽浓度依赖性寡聚化的综合生物物理和结构特征。我们结合分析超速离心、荧光和圆二色性光谱来探测溶液中 STIL CCD 肽的组装,并确定 WT STIL CCD 肽的二聚化 (K = 8 ± 2 μM) 和四聚化 (K = 68 ± 2 μM) 的解离常数。高阶寡聚体导致增加的热稳定性和缔合的协同性。我们认为这种复杂的寡聚化机制调节了细胞中 STIL 的激活水平和中心粒复制期间的激活水平。此外,我们还呈现了含有不稳定 (L736E) 和稳定 (Q729L) 突变的 CCD 的 X 射线晶体结构,分别揭示了二聚体和四聚体反平行卷曲螺旋结构。总体而言,这项研究为理解 STIL 蛋白的结构分子生物学以及如何靶向它来发现抗癌试剂提供了基础。

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Socket2: a program for locating, visualizing and analyzing coiled-coil interfaces in protein structures.Socket2:用于定位、可视化和分析蛋白质结构中卷曲螺旋界面的程序。
Bioinformatics. 2021 Dec 7;37(23):4575-4577. doi: 10.1093/bioinformatics/btab631.
2
Navigating the Structural Landscape of De Novo α-Helical Bundles.探索从头开始的 α-螺旋束的结构景观。
J Am Chem Soc. 2019 Jun 5;141(22):8787-8797. doi: 10.1021/jacs.8b13354. Epub 2019 May 22.
3
coiled-coil peptides as scaffolds for disrupting protein-protein interactions.作为破坏蛋白质-蛋白质相互作用支架的卷曲螺旋肽。
Chem Sci. 2018 Aug 7;9(39):7656-7665. doi: 10.1039/c8sc02643b. eCollection 2018 Oct 21.
4
Differential effects of zinc binding on structured and disordered regions in the multidomain STIL protein.锌结合对多结构域STIL蛋白中结构化区域和无序区域的不同影响。
Chem Sci. 2016 Jul 1;7(7):4140-4147. doi: 10.1039/c6sc00115g. Epub 2016 Mar 4.
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DIALS: implementation and evaluation of a new integration package.DIALS:一个新集成包的实现和评估。
Acta Crystallogr D Struct Biol. 2018 Feb 1;74(Pt 2):85-97. doi: 10.1107/S2059798317017235.
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CCP4i2: the new graphical user interface to the CCP4 program suite.CCP4i2:CCP4 程序套件的全新图形用户界面。
Acta Crystallogr D Struct Biol. 2018 Feb 1;74(Pt 2):68-84. doi: 10.1107/S2059798317016035.
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Coiled coil protein origami: from modular design principles towards biotechnological applications.螺旋线圈蛋白折纸术:从模块化设计原理到生物技术应用。
Chem Soc Rev. 2018 May 21;47(10):3530-3542. doi: 10.1039/c7cs00822h.
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STIL balancing primary microcephaly and cancer.仍在平衡原发性小头畸形和癌症。
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