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基于密度泛函理论(DFT)的计算方案对天然产物氢和碳核磁共振(NMR)化学位移的效率:pecS-(=1,2)基组精度研究。

On the Efficiency of the Density Functional Theory (DFT)-Based Computational Protocol for H and C Nuclear Magnetic Resonance (NMR) Chemical Shifts of Natural Products: Studying the Accuracy of the pecS- ( = 1, 2) Basis Sets.

机构信息

A. E. Favorsky Irkutsk Institute of Chemistry, Siberian Branch of the Russian Academy of Sciences, Favorsky St. 1, 664033 Irkutsk, Russia.

出版信息

Int J Mol Sci. 2023 Sep 27;24(19):14623. doi: 10.3390/ijms241914623.

DOI:10.3390/ijms241914623
PMID:37834068
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10572908/
Abstract

The basis set issue has always been one of the most important factors of accuracy in the quantum chemical calculations of NMR chemical shifts. In a previous paper, we developed new pecS- ( = 1, 2) basis sets purposed for the calculations of the NMR chemical shifts of the nuclei of the most popular NMR-active isotopes of 1-2 row elements and successfully approbated these on the DFT calculations of chemical shifts in a limited series of small molecules. In this paper, we demonstrate the performance of the pecS- ( = 1, 2) basis sets on the calculations of as much as 713 H and 767 C chemical shifts of 23 biologically active natural products with complicated stereochemical structures, carried out using the GIAO-DFT(PBE0) approach. We also proposed new alternative contraction schemes for our basis sets characterized by less contraction depth of the -shell. New contraction coefficients have been optimized with the property-energy consistent (PEC) method. The accuracies of the pecS- ( = 1, 2) basis sets of both the original and newly contracted forms were assessed on massive benchmark calculations of proton and carbon chemical shifts of a vast variety of natural products. It was found that less contracted pecS- ( = 1, 2) basis sets provide no noticeable improvement in accuracy. These calculations represent the most austere test of our basis sets as applied to routine calculations of the NMR chemical shifts of real-life compounds.

摘要

基组问题一直是核磁共振化学位移量子化学计算准确性的最重要因素之一。在之前的一篇论文中,我们开发了新的 pecS-(=1,2)基组,旨在计算最常用的 1-2 周期元素的核磁共振活性同位素核的核磁共振化学位移,并成功地在有限系列小分子的 DFT 化学位移计算中验证了这些基组。在本文中,我们展示了 pecS-(=1,2)基组在使用 GIAO-DFT(PBE0)方法计算 23 种具有复杂立体化学结构的生物活性天然产物的多达 713 个 H 和 767 个 C 化学位移方面的性能。我们还提出了新的替代收缩方案,这些方案的特征是 - 壳的收缩深度更小。新的收缩系数已通过性能-能量一致(PEC)方法进行了优化。原始和新收缩形式的 pecS-(=1,2)基组的准确性都在大量天然产物的质子和碳核磁共振化学位移基准计算中进行了评估。结果发现,收缩程度较小的 pecS-(=1,2)基组在准确性方面没有明显提高。这些计算代表了对我们的基组进行的最严格的测试,因为这些基组被应用于实际化合物的 NMR 化学位移的常规计算。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/851e/10572908/fc252a7d24a4/ijms-24-14623-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/851e/10572908/55fae4996535/ijms-24-14623-sch001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/851e/10572908/dfb865b751de/ijms-24-14623-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/851e/10572908/76de9dad3dc7/ijms-24-14623-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/851e/10572908/f459570fd202/ijms-24-14623-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/851e/10572908/fc252a7d24a4/ijms-24-14623-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/851e/10572908/55fae4996535/ijms-24-14623-sch001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/851e/10572908/dfb865b751de/ijms-24-14623-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/851e/10572908/76de9dad3dc7/ijms-24-14623-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/851e/10572908/f459570fd202/ijms-24-14623-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/851e/10572908/fc252a7d24a4/ijms-24-14623-g004.jpg

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