• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

分子噪声诱导的酶抑制动力学中的激活剂-抑制剂二元性。

Molecular noise-induced activator-inhibitor duality in enzyme inhibition kinetics.

机构信息

Department of Chemistry, Indian Institute of Technology, Madras, Chennai 600036, India.

出版信息

J Chem Phys. 2023 Oct 21;159(15). doi: 10.1063/5.0152686.

DOI:10.1063/5.0152686
PMID:37843064
Abstract

Classical theories of enzyme inhibition kinetics predict a monotonic decrease in the mean catalytic activity with the increase in inhibitor concentration. The steady-state result, derived from deterministic mass action kinetics, ignores molecular noise in enzyme-inhibition mechanisms. Here, we present a stochastic generalization of enzyme inhibition kinetics to mesoscopic enzyme concentrations by systematically accounting for molecular noise in competitive and uncompetitive mechanisms of enzyme inhibition. Our work reveals an activator-inhibitor duality as a non-classical effect in the transient regime in which inhibitors tend to enhance enzymatic activity. We introduce statistical measures that quantify this counterintuitive response through the stochastic analog of the Lineweaver-Burk plot that shows a merging of the inhibitor-dependent velocity with the Michaelis-Menten velocity. The statistical measures of mean and temporal fluctuations - fractional enzyme activity and waiting time correlations - show a non-monotonic rise with the increase in inhibitors before subsiding to their baseline value. The inhibitor and substrate dependence of the fractional enzyme activity yields kinetic phase diagrams for non-classical activator-inhibitor duality. Our work links this duality to a molecular memory effect in the transient regime, arising from positive correlations between consecutive product turnover times. The vanishing of memory in the steady state recovers all the classical results.

摘要

经典的酶抑制动力学理论预测,随着抑制剂浓度的增加,平均催化活性会呈单调下降。稳态结果是由确定性的质量作用动力学推导出的,忽略了酶抑制机制中的分子噪声。在这里,我们通过系统地考虑竞争和非竞争酶抑制机制中的分子噪声,将酶抑制动力学的随机广义化到介观酶浓度。我们的工作揭示了一种激活剂-抑制剂双重性作为瞬态效应中的一种非经典效应,其中抑制剂往往会增强酶的活性。我们引入了统计度量来通过随机模拟的 Lineweaver-Burk 图量化这种反直觉的响应,该图显示了抑制剂依赖性速度与米氏动力学速度的融合。平均和时间波动的统计度量 - 分数酶活性和等待时间相关性 - 在抑制剂增加之前呈非单调上升,然后降至基线值。分数酶活性的抑制剂和底物依赖性产生了非经典激活剂-抑制剂双重性的动力学相图。我们的工作将这种双重性与瞬态效应中的分子记忆效应联系起来,这种记忆效应源于连续产物转化时间之间的正相关。在稳态下记忆的消失恢复了所有的经典结果。

相似文献

1
Molecular noise-induced activator-inhibitor duality in enzyme inhibition kinetics.分子噪声诱导的酶抑制动力学中的激活剂-抑制剂二元性。
J Chem Phys. 2023 Oct 21;159(15). doi: 10.1063/5.0152686.
2
Transients generate memory and break hyperbolicity in stochastic enzymatic networks.瞬态产生记忆并破坏随机酶网络中的双曲性。
J Chem Phys. 2021 Jan 21;154(3):035101. doi: 10.1063/5.0031368.
3
Single-molecule theory of enzymatic inhibition.酶抑制的单分子理论。
Nat Commun. 2018 Feb 22;9(1):779. doi: 10.1038/s41467-018-02995-6.
4
Nonrenewal statistics in the catalytic activity of enzyme molecules at mesoscopic concentrations.在介观浓度下酶分子催化活性的非再生统计。
Phys Rev Lett. 2011 Nov 18;107(21):218301. doi: 10.1103/PhysRevLett.107.218301. Epub 2011 Nov 16.
5
Emergence of dynamic cooperativity in the stochastic kinetics of fluctuating enzymes.波动酶随机动力学中动态协同性的出现。
J Chem Phys. 2016 Aug 28;145(8):085103. doi: 10.1063/1.4961540.
6
Poisson indicator and Fano factor for probing dynamic disorder in single-molecule enzyme inhibition kinetics.用于探测单分子酶抑制动力学中动态无序的泊松指标和费诺因子。
J Phys Chem B. 2014 Sep 4;118(35):10405-12. doi: 10.1021/jp506141v. Epub 2014 Aug 22.
7
Investigating the robustness of the classical enzyme kinetic equations in small intracellular compartments.研究经典酶动力学方程在小细胞内区室中的稳健性。
BMC Syst Biol. 2009 Oct 8;3:101. doi: 10.1186/1752-0509-3-101.
8
Extracting signal from noise: kinetic mechanisms from a Michaelis-Menten-like expression for enzymatic fluctuations.从噪声中提取信号:米氏动力学机制类似于酶波动的米氏方程表达。
FEBS J. 2014 Jan;281(2):498-517. doi: 10.1111/febs.12545. Epub 2013 Oct 25.
9
Noise slows the rate of Michaelis-Menten reactions.噪音会减缓米氏反应的速率。
J Theor Biol. 2017 Oct 7;430:21-31. doi: 10.1016/j.jtbi.2017.06.039. Epub 2017 Jul 1.
10
Theory on the rate equations of Michaelis-Menten type enzyme kinetics with competitive inhibition.米氏型酶动力学的 Michaelis-Menten 型速率方程的理论与竞争性抑制。
PLoS One. 2024 Jul 18;19(7):e0302679. doi: 10.1371/journal.pone.0302679. eCollection 2024.