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从人伤口脓液中分离出的耐甲氧西林菌株D1418m22的基因组序列草图

Draft genome sequence of methicillin-resistant strain D1418m22 isolated from human wound pus.

作者信息

Iram Daraksha, Sansi Manish Singh, Puniya Anil Kumar, Meena Sunita, Vij Shilpa

机构信息

Antimicrobial Peptides, Biofunctional Probiotics & Peptidomics Laboratory, Dairy Microbiology Division, ICAR-National Dairy Research Institute , Karnal, Haryana, India.

Biofunctional Peptidomics & Metabolic Syndrome Laboratory, Animal Biochemistry Division, ICAR-National Dairy Research Institute , Karnal, Haryana, India.

出版信息

Microbiol Resour Announc. 2023 Nov 16;12(11):e0040923. doi: 10.1128/MRA.00409-23. Epub 2023 Oct 17.

DOI:10.1128/MRA.00409-23
PMID:37847019
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10652905/
Abstract

This study reveals the complete genome sequence of methicillin-resistant (MRSA) strain d1418m22, sourced from a Karnal, Haryana, human skin wound. Classified as community-associated MRSA, it features a 2.78-MB genome harboring -specific genetic elements, encompassing 2,625 protein-coding genes and 18 antimicrobial resistance genes.

摘要

本研究揭示了一株耐甲氧西林金黄色葡萄球菌（MRSA）菌株d1418m22的全基因组序列，该菌株分离自哈里亚纳邦卡纳尔的一名人类皮肤伤口。该菌株被归类为社区相关性MRSA，其基因组大小为2.78兆碱基，含有特定的遗传元件，包括2625个蛋白质编码基因和18个抗菌抗性基因。

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本文引用的文献

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BUSCO Update: Novel and Streamlined Workflows along with Broader and Deeper Phylogenetic Coverage for Scoring of Eukaryotic, Prokaryotic, and Viral Genomes.BUSCO 更新：用于真核生物、原核生物和病毒基因组评分的新颖且简化的工作流程以及更广泛和更深的系统发育覆盖范围。
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Genomic analysis of methicillin-resistant Staphylococcus aureus strain SO-1977 from Sudan.苏丹耐甲氧西林金黄色葡萄球菌 SO-1977 株的基因组分析。
BMC Microbiol. 2019 Jun 11;19(1):126. doi: 10.1186/s12866-019-1470-2.
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Bioinformatics. 2014 Jan 1;30(1):31-7. doi: 10.1093/bioinformatics/btt310. Epub 2013 Jun 3.
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