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一个用于地下生物进化比较研究的协作性骨干资源:世界潮虫科数据库。

A collaborative backbone resource for comparative studies of subterranean evolution: The World Asellidae database.

作者信息

Saclier Nathanaelle, Duchemin Louis, Konecny-Dupré Lara, Grison Philippe, Eme David, Martin Chloé, Callou Cécile, Lefébure Tristan, François Clémentine, Issartel Colin, Lewis Julian J, Stoch Fabio, Sket Boris, Gottstein Sanja, Delić Teo, Zagmajster Maja, Grabowski Michal, Weber Dieter, Reboleira Ana Sofia P S, Palatov Dmitry, Paragamian Kaloust, Knight Lee R F D, Michel Georges, Lefebvre Francois, Hosseini Mohammad-Javad Malek, Camacho Ana I, De Bikuña Begoña Gartzia, Taleb Amina, Belaidi Nouria, Tuekam Kayo Raoul P, Galassi Diana Maria Paola, Moldovan Oana Teodora, Douady Christophe J, Malard Florian

机构信息

Univ Lyon, Université Claude Bernard Lyon 1, CNRS, ENTPE, UMR 5023 LEHNA, Villeurbanne, France.

ISEM, CNRS, Univ. Montpellier, IRD, EPHE, Montpellier, France.

出版信息

Mol Ecol Resour. 2024 Jan;24(1):e13882. doi: 10.1111/1755-0998.13882. Epub 2023 Oct 21.

DOI:10.1111/1755-0998.13882
PMID:37864541
Abstract

Transition to novel environments, such as groundwater colonization by surface organisms, provides an excellent research ground to study phenotypic evolution. However, interspecific comparative studies on evolution to groundwater life are few because of the challenge in assembling large ecological and molecular resources for species-rich taxa comprised of surface and subterranean species. Here, we make available to the scientific community an operational set of working tools and resources for the Asellidae, a family of freshwater isopods containing hundreds of surface and subterranean species. First, we release the World Asellidae database (WAD) and its web application, a sustainable and FAIR solution to producing and sharing data and biological material. WAD provides access to thousands of species occurrences, specimens, DNA extracts and DNA sequences with rich metadata ensuring full scientific traceability. Second, we perform a large-scale dated phylogenetic reconstruction of Asellidae to support phylogenetic comparative analyses. Of 424 terminal branches, we identify 34 pairs of surface and subterranean species representing independent replicates of the transition from surface water to groundwater. Third, we exemplify the usefulness of WAD for documenting phenotypic shifts associated with colonization of subterranean habitats. We provide the first phylogenetically controlled evidence that body size of males decreases relative to that of females upon groundwater colonization, suggesting competition for rare receptive females selects for smaller, more agile males in groundwater. By making these tools and resources widely accessible, we open up new opportunities for exploring how phenotypic traits evolve in response to changes in selective pressures and trade-offs during groundwater colonization.

摘要

向新环境的转变,例如地表生物向地下水环境的定殖,为研究表型进化提供了绝佳的研究平台。然而,由于要为包含地表和地下物种的物种丰富类群收集大量生态和分子资源存在挑战,关于向地下水生活进化的种间比较研究较少。在此,我们为科学界提供了一套适用于潮虫科的实用工作工具和资源,潮虫科是一类淡水等足动物,包含数百种地表现生和地下物种。首先,我们发布了世界潮虫科数据库(WAD)及其网络应用程序,这是一种可持续且符合FAIR原则的解决方案,用于数据和生物材料的生成与共享。WAD提供了数千个物种出现记录、标本、DNA提取物和DNA序列,并带有丰富的元数据,确保了完整的科学可追溯性。其次,我们对潮虫科进行了大规模的定年系统发育重建,以支持系统发育比较分析。在424个终端分支中,我们识别出34对地表和地下物种,它们代表了从地表水到地下水转变的独立重复样本。第三,我们举例说明了WAD在记录与地下栖息地定殖相关的表型变化方面的有用性。我们提供了首个经过系统发育控制的证据,表明在向地下水定殖后,雄性个体的体型相对于雌性个体减小,这表明对稀少的可接受雌性的竞争使得地下水中选择了体型更小、更敏捷的雄性。通过广泛提供这些工具和资源,我们为探索表型性状如何响应地下水定殖过程中选择压力和权衡的变化而进化开辟了新的机会。

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