Bárdy Pavol, MacDonald Conor I W, Pantůček Roman, Antson Alfred A, Fogg Paul C M
York Structural Biology Laboratory, Department of Chemistry, University of York, Heslington, York YO10 5DD, UK.
Department of Experimental Biology, Faculty of Science, Masaryk University, 625 00 Brno, Czech Republic.
iScience. 2023 Sep 29;26(11):108104. doi: 10.1016/j.isci.2023.108104. eCollection 2023 Nov 17.
Although membrane-containing dsDNA bacterial viruses are some of the most prevalent predators in aquatic environments, we know little about how they function due to their intractability in the laboratory. Here, we have identified and thoroughly characterized a new type of membrane-containing bacteriophage, Jorvik, that infects the freshwater mixotrophic model bacterium . Jorvik is extremely virulent, can persist in the host integrated into the RuBisCo operon and encodes two experimentally verified cell wall hydrolases. Jorvik-like prophages are abundant in the genomes of Alphaproteobacteria, are distantly related to known viruses of the class and we propose they should be classified as a new family. Crucially, we demonstrate how widely used phage manipulation methods should be adjusted to prevent loss of virus infectivity. Our thorough characterization of environmental phage Jorvik provides important experimental insights about phage diversity and interactions in microbial communities that are often unexplored in common metagenomic analyses.
尽管含膜双链DNA细菌病毒是水生环境中最普遍的捕食者之一,但由于它们在实验室中难以处理,我们对其功能了解甚少。在这里,我们鉴定并全面表征了一种新型的含膜噬菌体Jorvik,它感染淡水兼养型模式细菌。Jorvik具有极强的毒性,可以整合到宿主的核酮糖-1,5-二磷酸羧化酶操纵子中持续存在,并编码两种经实验验证的细胞壁水解酶。类Jorvik原噬菌体在变形杆菌门的基因组中大量存在,与已知的该类病毒关系较远,我们建议将它们归为一个新科。至关重要的是,我们展示了应如何调整广泛使用的噬菌体操作方法以防止病毒感染力丧失。我们对环境噬菌体Jorvik的全面表征为噬菌体多样性以及微生物群落中的相互作用提供了重要的实验见解,而这些在常见的宏基因组分析中常常未被探索。