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基于结构和配体的联合方法鉴定. 中的 AcrAB-TolC 抑制剂

Combined Structure- and Ligand-Based Approach for the Identification of Inhibitors of AcrAB-TolC in .

机构信息

Health and Biomedical Innovation, Clinical and Health Sciences, University of South Australia, Adelaide, South Australia 5000, Australia.

Quality Use of Medicines and Pharmacy Research Centre, Clinical and Health Sciences, University of South Australia, Adelaide, South Australia 5000, Australia.

出版信息

ACS Infect Dis. 2023 Dec 8;9(12):2504-2522. doi: 10.1021/acsinfecdis.3c00350. Epub 2023 Oct 27.


DOI:10.1021/acsinfecdis.3c00350
PMID:37888944
Abstract

The inhibition of efflux pumps is a promising approach to combating multidrug-resistant bacteria. We have developed a combined structure- and ligand-based model, using OpenEye software, for the identification of inhibitors of AcrB, the inner membrane protein component of the AcrAB-TolC efflux pump in . From a database of 1391 FDA-approved drugs, 23 compounds were selected to test for efflux inhibition in . Seven compounds, including ivacaftor (), butenafine (), naftifine (), pimozide (), thioridazine (), trifluoperazine (), and meloxicam (), enhanced the activity of at least one antimicrobial substrate and inhibited the efflux pump-mediated removal of the substrate Nile Red from cells. Ivacaftor () inhibited efflux dose dependently, had no effect on an strain with genomic deletion of the gene encoding AcrB, and did not damage the bacterial outer membrane. In the presence of a sub-minimum inhibitory concentration (MIC) of the outer membrane permeabilizer colistin, ivacaftor at 1 μg/mL reduced the MICs of erythromycin and minocycline by 4- to 8-fold. The identification of seven potential AcrB inhibitors shows the merits of a combined structure- and ligand-based approach to virtual screening.

摘要

抑制外排泵是一种有前途的对抗多药耐药细菌的方法。我们使用 OpenEye 软件开发了一种基于结构和配体的组合模型,用于鉴定 AcrB 的抑制剂,AcrB 是. 中的 AcrAB-TolC 外排泵的内膜蛋白成分。从一个包含 1391 种 FDA 批准药物的数据库中,选择了 23 种化合物来测试. 中的外排抑制作用。七种化合物,包括 ivacaftor ()、布替萘芬 ()、萘替芬 ()、匹莫齐特 ()、硫利达嗪 ()、三氟拉嗪 ()和 meloxicam (),增强了至少一种抗菌底物的活性,并抑制了底物 Nile Red 通过细胞的外排泵介导的去除。Ivacaftor () 呈剂量依赖性抑制外排,对基因组缺失编码 AcrB 的基因的. 菌株没有影响,也不会破坏细菌的外膜。在最低抑菌浓度 (MIC) 的外膜通透剂黏菌素存在下,1 μg/mL 的 ivacaftor 将红霉素和米诺环素的 MIC 降低了 4 到 8 倍。七种潜在的 AcrB 抑制剂的鉴定表明,基于结构和配体的组合方法进行虚拟筛选具有优势。

相似文献

[1]
Combined Structure- and Ligand-Based Approach for the Identification of Inhibitors of AcrAB-TolC in .

ACS Infect Dis. 2023-12-8

[2]
Metabolomics Reveal Potential Natural Substrates of AcrB in Escherichia coli and Salmonella enterica Serovar Typhimurium.

mBio. 2021-3-30

[3]
Escherichia coli resistance mechanism AcrAB-TolC efflux pump interactions with commonly used antibiotics: a molecular dynamics study.

Sci Rep. 2024-2-1

[4]
Identification of natural compound inhibitors for multidrug efflux pumps of Escherichia coli and Pseudomonas aeruginosa using in silico high-throughput virtual screening and in vitro validation.

PLoS One. 2014-7-15

[5]
AcrB-AcrA Fusion Proteins That Act as Multidrug Efflux Transporters.

J Bacteriol. 2015-11-2

[6]
The C-terminal domain of AcrA is essential for the assembly and function of the multidrug efflux pump AcrAB-TolC.

J Bacteriol. 2009-7

[7]
In situ structure of the AcrAB-TolC efflux pump at subnanometer resolution.

Structure. 2022-1-6

[8]
Properties of AdeABC and AdeIJK efflux systems of Acinetobacter baumannii compared with those of the AcrAB-TolC system of Escherichia coli.

Antimicrob Agents Chemother. 2014-12

[9]
Engineering a CRISPR interference system targeting AcrAB-TolC efflux pump to prevent multidrug resistance development in Escherichia coli.

J Antimicrob Chemother. 2022-7-28

[10]
Interactions underlying assembly of the Escherichia coli AcrAB-TolC multidrug efflux system.

Mol Microbiol. 2004-7

引用本文的文献

[1]
The effect of commonly used non-antibiotic medications on antimicrobial resistance development in Escherichia coli.

NPJ Antimicrob Resist. 2025-8-25

[2]
Extending the Potency and Lifespan of Antibiotics: Inhibitors of Gram-Negative Bacterial Efflux Pumps.

ACS Infect Dis. 2024-5-10

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