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用于生物技术方法的B族DNA聚合酶的直接酶工程

Direct Enzyme Engineering of B Family DNA Polymerases for Biotechnological Approaches.

作者信息

Kuznetsova Aleksandra A, Kuznetsov Nikita A

机构信息

Institute of Chemical Biology and Fundamental Medicine, Siberian Branch of Russian Academy of Sciences (SB RAS), 8 Prospekt Akad. Lavrentyeva, Novosibirsk 630090, Russia.

Department of Natural Sciences, Novosibirsk State University, 2 Pirogova Str., Novosibirsk 630090, Russia.

出版信息

Bioengineering (Basel). 2023 Sep 30;10(10):1150. doi: 10.3390/bioengineering10101150.

DOI:10.3390/bioengineering10101150
PMID:37892880
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10604792/
Abstract

DNA-dependent DNA polymerases have been intensively studied for more than 60 years and underlie numerous biotechnological and diagnostic applications. In vitro, DNA polymerases are used for DNA manipulations, including cloning, PCR, site-directed mutagenesis, sequencing, and others. Understanding the mechanisms of action of DNA polymerases is important for the creation of new enzymes possessing improved or modified properties. This review is focused on archaeal family B DNA polymerases. These enzymes have high fidelity and thermal stability and are finding many applications in molecular biological methods. Nevertheless, the search for and construction of new DNA polymerases with altered properties is constantly underway, including enzymes for synthetic biology. This brief review describes advances in the development of family B DNA polymerases for PCR, synthesis of xeno-nucleic acids, and reverse transcription.

摘要

依赖DNA的DNA聚合酶已经被深入研究了60多年,并且是众多生物技术和诊断应用的基础。在体外,DNA聚合酶用于DNA操作,包括克隆、聚合酶链反应(PCR)、定点诱变、测序等。了解DNA聚合酶的作用机制对于创建具有改进或修饰特性的新酶很重要。本综述聚焦于古菌B族DNA聚合酶。这些酶具有高保真度和热稳定性,并且在分子生物学方法中有许多应用。然而,寻找和构建具有改变特性的新DNA聚合酶的工作一直在进行,包括用于合成生物学的酶。这篇简短的综述描述了用于PCR、异核酸合成和逆转录的B族DNA聚合酶的开发进展。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/11d0/10604792/34715b4b4cea/bioengineering-10-01150-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/11d0/10604792/686f6c18610c/bioengineering-10-01150-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/11d0/10604792/34715b4b4cea/bioengineering-10-01150-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/11d0/10604792/686f6c18610c/bioengineering-10-01150-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/11d0/10604792/34715b4b4cea/bioengineering-10-01150-g002.jpg

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本文引用的文献

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Thermophilic Nucleic Acid Polymerases and Their Application in Xenobiology.嗜热核酸聚合酶及其在外源物生物学中的应用。
Int J Mol Sci. 2022 Nov 29;23(23):14969. doi: 10.3390/ijms232314969.
2
A two-residue nascent-strand steric gate controls synthesis of 2'-O-methyl- and 2'-O-(2-methoxyethyl)-RNA.两残基新生链空间位阻门控 2'-O-甲基化和 2'-O-(2-甲氧基乙基)RNA 的合成。
Nat Chem. 2023 Jan;15(1):91-100. doi: 10.1038/s41557-022-01050-8. Epub 2022 Oct 13.
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Synthesis and Polymerase Recognition of Threose Nucleic Acid Triphosphates Equipped with Diverse Chemical Functionalities.
合成与聚合酶识别具有不同化学官能团的 threose 核酸三磷酸
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Functional Comparison of Laboratory-Evolved XNA Polymerases for Synthetic Biology.用于合成生物学的实验室进化XNA聚合酶的功能比较
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DNA Polymerase Variants with High Processivity and Accuracy for Encoding and Decoding Locked Nucleic Acid Sequences.具有高持续合成能力和准确性的 DNA 聚合酶变体,用于编码和解码锁核酸序列。
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How a B family DNA polymerase has been evolved to copy RNA.B 族 DNA 聚合酶是如何进化来复制 RNA 的。
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PCR past, present and future.PCR 的过去、现在和未来。
Biotechniques. 2020 Oct;69(4):317-325. doi: 10.2144/btn-2020-0057. Epub 2020 Aug 20.
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Engineering polymerases for applications in synthetic biology.工程化聚合酶在合成生物学中的应用。
Q Rev Biophys. 2020 Jul 27;53:e8. doi: 10.1017/S0033583520000050.
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Discovery and evolution of RNA and XNA reverse transcriptase function and fidelity.RNA 和 XNA 逆转录酶功能和保真度的发现和进化。
Nat Chem. 2020 Aug;12(8):683-690. doi: 10.1038/s41557-020-0502-8. Epub 2020 Jul 20.