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患有脐疝的猪肌肉和结缔组织中 和 基因的转录水平改变。

Altered Transcript Levels of and Genes in the Muscle and Connective Tissue of Pigs with Umbilical Hernia.

机构信息

Department of Genetics and Animal Breeding, Poznan University of Life Sciences, Wolynska 33, 60-637 Poznan, Poland.

Department of Pathology, Wroclaw University of Environmental and Life Sciences, C.K. Norwida 31, 50-375 Wroclaw, Poland.

出版信息

Genes (Basel). 2023 Oct 1;14(10):1903. doi: 10.3390/genes14101903.

DOI:10.3390/genes14101903
PMID:37895252
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10606093/
Abstract

Umbilical hernia (UH) and inguinal hernia (IH) are among the most common defects in pigs, affecting their welfare and resulting in economic losses. In this study, we aimed to verify the association of previously reported differences in transcript levels of the , , , and genes with the occurrence of UH and IH. We examined mRNA levels in muscle and connective tissue from 68 animals-34 affected by UH and 34 controls. In a second cohort, we examined inguinal channel samples from 46 pigs (in four groups). We determined DNA methylation levels in muscle tissue for the UH and control animals. The transcript level of changed in the UH cases, being upregulated and downregulated in muscle and connective tissue, respectively, and the gene also showed an increased muscular mRNA level. The transcript of the gene significantly decreased in old pigs with IH. We further observed an increased DNA methylation level for one CpG site within the gene in UH individuals. We conclude that these alterations in gene mRNA levels in the UH animals depend on the tissue and can sometimes be a consequence of, not a cause of, the affected phenotype.

摘要

脐疝(UH)和腹股沟疝(IH)是猪中最常见的缺陷之一,影响它们的福利并导致经济损失。在这项研究中,我们旨在验证先前报道的 、 、 和 基因转录水平的差异与 UH 和 IH 的发生之间的关联。我们检查了 68 只动物(34 只受 UH 影响,34 只对照)肌肉和结缔组织中的 mRNA 水平。在第二组中,我们检查了 46 只猪(分为四组)的腹股沟通道样本。我们确定了 UH 和对照动物肌肉组织中的 DNA 甲基化水平。在 UH 病例中, 的转录水平发生改变,分别在肌肉和结缔组织中上调和下调,并且 基因也显示出肌肉 mRNA 水平增加。IH 老年猪中 基因的转录显著降低。我们还观察到 UH 个体中 基因内一个 CpG 位点的 DNA 甲基化水平增加。我们的结论是,UH 动物中这些基因 mRNA 水平的改变取决于组织,有时可能是受影响表型的结果,而不是原因。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8701/10606093/c6af30fcac47/genes-14-01903-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8701/10606093/458e610fef54/genes-14-01903-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8701/10606093/3b28dbd035c3/genes-14-01903-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8701/10606093/c6af30fcac47/genes-14-01903-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8701/10606093/458e610fef54/genes-14-01903-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8701/10606093/3b28dbd035c3/genes-14-01903-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8701/10606093/c6af30fcac47/genes-14-01903-g003.jpg

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本文引用的文献

1
A Systematic Review on the Role of Matrix Metalloproteinases in the Pathogenesis of Inguinal Hernias.基质金属蛋白酶在腹股沟疝发病机制中的作用的系统评价。
Biomolecules. 2023 Jul 14;13(7):1123. doi: 10.3390/biom13071123.
2
A confirmed association between DNA variants in CAPN9, OSM, and ITGAM candidate genes and the risk of umbilical hernia in pigs.CAPN9、OSM 和 ITGAM 候选基因中的 DNA 变异与猪脐疝风险之间的明确关联。
Anim Genet. 2023 Jun;54(3):307-314. doi: 10.1111/age.13307. Epub 2023 Feb 22.
3
Genes and SNPs Involved with Scrotal and Umbilical Hernia in Pigs.
与猪阴囊疝和脐疝相关的基因和单核苷酸多态性。
Genes (Basel). 2021 Jan 27;12(2):166. doi: 10.3390/genes12020166.
4
Transcriptome analysis identifies genes involved with the development of umbilical hernias in pigs.转录组分析鉴定出与猪脐疝发育相关的基因。
PLoS One. 2020 May 7;15(5):e0232542. doi: 10.1371/journal.pone.0232542. eCollection 2020.
5
Prospects for sustainability of pig production in relation to climate change and novel feed resources.猪生产应对气候变化和新型饲料资源可持续性的前景。
J Sci Food Agric. 2020 Jul;100(9):3575-3586. doi: 10.1002/jsfa.10338. Epub 2020 Mar 14.
6
Inguinal Ring RNA Sequencing Reveals Downregulation of Muscular Genes Related to Scrotal Hernia in Pigs.腹股沟环 RNA 测序显示,猪的阴囊疝相关肌肉基因下调。
Genes (Basel). 2020 Jan 21;11(2):117. doi: 10.3390/genes11020117.
7
The diverse roles of DNA methylation in mammalian development and disease.DNA 甲基化在哺乳动物发育和疾病中的多种作用。
Nat Rev Mol Cell Biol. 2019 Oct;20(10):590-607. doi: 10.1038/s41580-019-0159-6. Epub 2019 Aug 9.
8
The R package Rsubread is easier, faster, cheaper and better for alignment and quantification of RNA sequencing reads.Rsubread 软件包在 RNA 测序reads 的比对和定量方面,具有更简单、更快、更便宜和更好的优势。
Nucleic Acids Res. 2019 May 7;47(8):e47. doi: 10.1093/nar/gkz114.
9
Genome-wide association study identifies variants in the CAPN9 gene associated with umbilical hernia in pigs.全基因组关联研究确定了与猪脐疝相关的钙蛋白酶9(CAPN9)基因中的变异。
Anim Genet. 2019 Apr;50(2):162-165. doi: 10.1111/age.12760. Epub 2019 Feb 12.
10
DNA methylation subpatterns at distinct regulatory regions in human early embryos.人类早期胚胎中不同调控区域的 DNA 甲基化亚模式。
Open Biol. 2018 Oct 31;8(10):180131. doi: 10.1098/rsob.180131.