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解析潜在抑制剂与 DHODH 酶之间的相互作用:计算视角。

Deciphering Interactions between Potential Inhibitors and the DHODH Enzyme: A Computational Perspective.

机构信息

Departamento de Biofísica e Farmacologia, Universidade Federal do Rio Grande do Norte, 59072-970 Natal-RN, Brazil.

Applied Physics Department, University of Campinas, 130838-59 Campinas, São Paulo, Brazil.

出版信息

J Phys Chem B. 2023 Nov 9;127(44):9461-9475. doi: 10.1021/acs.jpcb.3c05738. Epub 2023 Oct 28.

DOI:10.1021/acs.jpcb.3c05738
PMID:37897437
Abstract

Malaria is a parasitic disease that, in its most severe form, can even lead to death. Insect-resistant vectors, insufficiently effective vaccines, and drugs that cannot stop parasitic infestations are making the fight against the disease increasingly difficult. It is known that the enzyme dihydroorotate dehydrogenase (DHODH) is of paramount importance for the synthesis of pyrimidine from the precursor, that is, for its growth and reproduction. Therefore, its blockade can lead to disruption of the parasite's life cycle in the vertebrate host. In this scenario, DHODH inhibitors have been considered candidates for a new therapy to stop the parasitic energy source. Given what is known, in this work, we applied molecular fractionation with conjugated caps (MFCC) in the framework of the quantum formalism of density functional theory (DFT) to evaluate the energies of the interactions between the enzyme and the different triazolopyrimidines (DSM483, DMS557, and DSM1), including a complex carrying the mutation C276F. From these results, it was possible to identify the main features of each system, focusing on the wild-type and mutant DHODH and examining the major amino acid residues that are part of the four complexes. Our analysis provides new information that can be used to develop new drugs that could prove to be more effective alternatives to present antimalarial drugs.

摘要

疟疾是一种寄生虫病,在最严重的情况下,甚至可能导致死亡。抗虫媒介、效果不够理想的疫苗以及无法阻止寄生虫感染的药物使得抗击疟疾的工作越来越困难。众所周知,二氢乳清酸脱氢酶(DHODH)对于嘧啶前体从原料合成(即生长和繁殖)至关重要。因此,阻断它可以导致寄生虫在脊椎动物宿主中的生命周期中断。在这种情况下,DHODH 抑制剂已被认为是一种新疗法的候选药物,可以阻止寄生虫的能量来源。根据已知的情况,在这项工作中,我们在密度泛函理论(DFT)的量子形式框架内应用共轭帽的分子分馏(MFCC)来评估酶与不同三唑嘧啶(DSM483、DMS557 和 DSM1)之间相互作用的能量,包括携带突变 C276F 的复合物。从这些结果中,可以确定每个系统的主要特征,重点关注野生型和突变型 DHODH,并检查构成四个复合物的主要氨基酸残基。我们的分析提供了新的信息,可以用于开发新的药物,这些药物可能比现有的抗疟药物更有效。

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